Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr10g2183 ATGGAAAGGAATGGTGATGGGAAGGCTCAAGATTCAGAGCCTTCAACGCCTCCTTCTGTTCTGAAGATGGGATTCAGAGAACGTACCAGCAGCATGGAGGATCCAGATGGGACATTAGCAAGTGTTGCCCAATGCATTGAGCAGCTGCGTCAGAGCTCATCTTCTGTACAAGAAAAAGAGAAATCTTTGAAACAGTTATTGGAGCTTATTGAAATGCGAGCAAATGCTTTCAGTGCTCTTGGATCTCATTCTCAGGCTGTTCCAGTACTTGTTTCCCTTCTCCGGTCAGGGTCATTGAATGTGAAGATTCAGGCAGCAACAGTCTTGGGCTCACTTTGTAAAGAAAATGAGCTGAGGGTGAAAGTCTTGCTTGGAGGATGCATTCCTCCCCTACTTGGTCTACTCAAGTCCAGTTCTTCTGAAGGTCAAGTGGCTGCTGCAAAAACTATTTTCGCTGTCTCTCAAGGTGGTGCTAAGGATCATGTTGGATCAAAAATTTTTTCAACTGAAGGAGTTGTTCCAGTGCTCTGGGAGCAGCTGCAAAAGGGCCTGAAGACAGATAATGTAGTTGATAATTTATTGACTGGAGCATTGAAAAATCTCTCCAGCAGCACTGAGAGATTCTGGAATGCCACAATACAAGCTGGGGGAGTTGACATATTAATTAAGTTACTGACAACAGGGCGGTCTAGCACTTTAGCAAATGTGTGCTTTTTACTTGCTTGTATGATGATTGAGGATGCATCTGTTTGTTCAAAGGTATTGGCAGCAGAGGCAACAAAACAACTTCTCAAACTTTTAGGCCCTGGTAATGATGCCCCTGTTAGGGCTGAAGCAGCTGGTGCTCTTAAATCTCTATCTGCCCAGTGCAAAGATGCTAGGAAAGAGATAGCCAATTCTAATGGCATCCCTGCTTTGATTAATGCTACCATAGCTCCTTCCAAAGAGTTCATGCAAGGTGAGTATGCTCAAGCATTACAGGAGAATGCTATGTGTGCTTTAGCAAACATCTCTGGTGGTTTATCTTATGTCATCTCCAGTCTTGGTCAAAGCCTTGAATCATGCTCCTCTCCTGCCCAAATTGCTGATACGTTGGGGGCTTTAGCTTCAGCTCTTATGATATATGATGACAAGGCAGAATCTAATAGAGCATCAGATCCTTTGGTAGTTGAGGAGTCATTACTCAAGCAATTTAAGCCTCACTTGCCATTCCTTGTGCAGGAACGGACCATTGAAGCCCTAGCTAGTTTATATAGCAATCCTATACTCTCAATTAAACTTGCAAATTCTGAGGCAAAGCGTTTGCTTGTTGGCTTAATAACAATGGCTGCCAGTGAAGTGCAAGATGAACTTCTAAAATCTCTCTTGACATTGTGCAATAGTGAATGCAGTCTATGGCATGCACTTCAAGGCCGTGAAGGAGTTCAGCTATTGATATCTCTTCTGGGGCTTTCATCAGAACAGCAGCAAGAATGTGCTGTTGCCCTCCTTTGCCTTCTATCTAATGAAAATGATGAAAGTAAATGGGCCATTACTGCTGCTGGTGGTATACCGCCTCTTGTTCAAATTTTGGAGTCAGGATCTGCAAAAGCAAAGGAAGATTCAGCGACAATCCTTAGGAACCTGTGTGATCATAGTGAGGATATACGTGCTTGTGTTGAAAGTGCTGATGCTGTTCCTGCATTGTTGTGGCTATTGAAGAATGGAAGCCCAAATGGGAAAGAAATTGCAGCAAAGACCTTGAATCACTTAATTCATAAATCTGATACTGCAACTATCAGTCAGCTTACAGCATTATTGACCAGTGATCTACCTGAATCTAAGGTTTATGTTTTAGATGCTTTGAGAAGTATGCTTTCTATTGTTGCTCTTAGTGATCTTCTACGTGAAGGTAGTGCTGCCAGTGATGCAATTGATACAATAATAAAATTATTGAGCTTGACCAAGGAAGAAACTCAGGCGAAGTCTGCATGTGCACTAGCGGGAATTTTTGAAACGAGGAAAGATGTGCGTGAAAGCCGCATTGCTGTTAAAACTCTTTGGGCAGCAATGAAGTTGCTTAATGTTGAATCTGAAAGTATCTTAATTGAGTCCTCACGCTGCCTGGCTGCAATATTTCTTTCCATCAAAGAGAATAGAGATGTAGCTGCTATTGCTAGAGATGCATTACCCTCCCTAGTTGCACTAGCTAACTCTTCGGTTTTGGAGGTGGCAGAGCTGGCAACATGTGCTGTGGCAAACCTTATTTTGGACAGTGAAATTGCTGAGAAAGCTGTAGCAGAAGAAGTTATCTTGCCTGCTACTAGAGTATTACGTGAAGGAACAGTTTCTGGAAAAACACATGCTGCTGCAGCGATTGCTCGCCTCTTACATTCCAGGCAAGTTGATTATGCTGTAACTGATTGTGTGAATCGTGCGGGTACTGTTCTTGGATTAGTTTCTTTCTTAGACTCTGCCAGCACTGGACCTGGTTCTACATCTGAGGCTCTGGAAGCACTGGCGATTCTGTCAAGGTCAGAAAAGATCAGTGCACATAGTAAACCTGCTTGGGCAGTTTTGGCTGAATTTCCCAAAAGCATATGCCCAATAGTTCTGTCTATTGCTAATTCAACGCCAGTGTTGCAGGATAAAGCTATTGAAATATTATCTCGATTATGTAAGGATCAGCCTTTTATTCTGGGAGACGCTGTTGCTACTTCCTCTGGATGCATATCTTCTATAGCTAAGAGGATAATCAATTCCACTTCTGCAAATGTGAAGGTCAAAATTGGCGGAGCTGCAATTCTTATTTGTGCTGCTAAAGTAAATCATCAAAGGCTGGTGGAGGATCTCAATTTATCAAACTTGTGTGCTGATCTTGTGCAGTCTCTTGTTGATATGCTTATTTCTTCACAGGCTATTTTGGATAATCAGGGTGATGACAACAAGGAAGTTATCAGCATTTGCAGGCATACAAAAGAAGAGGCCAATGATGGTAAATCTAACACTGGCACCAGTATTGTATCTGGTGCCAACTTAGCTATATGGTTACTGTCTGTTCTTGCTTGTCATGATGAAAAAAGTAAAGTTGCAATAACGGAGGCTGGAGCAATTGAGGTTCTCACGGATAGGGTTGCAAATTGTTTCTCACAATATAGTCAGATTGACTATAAAGAAGACAGCAGCATGTGGATTTGTGCTTTGTTGATGGCAATATTATTCCAAGATAGGGATATCATACGAGCACATTCAACCATGAACTCTATACCAGCACTTGCCAATTTATTGAAGTCTGAGGAATCAGCAAACAGATATTTTGCTGCACAATCAATAGCTAGCCTAGTCTGTAATGGTAGTAGGGGAACACTTTTGTCTCTGGCAAATTCTGGGGCAGCAGGTGGACTTATCTCCTTGCTTGGCTGTGCTGATTCTGATATACAGGATCTCCTGGAATTGTCAGAGGAATTTTCTTTGGTACAATATCCGGATCAAGTTGCTCTGGAGAGGTTGTTTAGAGTTGATGACATAAGAGTTGGTGCTACTTCTCGGAAGGCAATACCTGCTCTAGTTGATTTACTCAAACCAATTCCAGAACGCCCAGGAGCACCATTTTTGGCACTTGGGCTTTTGACTCAGCTTGCTGTTGATTGTCCATCAAATAAGATTGTAATGGTTGAGTCAGGGGCCTTAGAGGCACTTTCTAAATATCTTTCACTGGGTCCACAAGATGCAACAGAAGAAGCTGCAACAGATCTGCTAGGTATTCTGTTTAGCAGTGCTGAGATACGGAGACATGAGTCAGCATTTGGTGCTGTTACTCAACTTGTAGCTGTCCTACGTTTAGGAGGAAGAGCTGCAAGGTATAGGGCAGCAAAAGCTTTGGAAAGTTTATTCTCTGCTGACCATATTAGAAATGCAGATAGTGCTCGACAAGCTGTTCAACCGTTGGTGGAGATTCTTAACACTGGTTTAGAGAGAGAGCAGCATGCTGCAATTGCTGCATTAGTTAGGTTACTGAGTGAAAACCCTTCAAGAGCACTCGCTGTTGCAGATGTTGAGATGAATGCAGTGGATGTTCTTTGCAGGATTCTTTCATCAGATTGTTCAATGGACCTCAAAGGGGATGCTGCTGAATTATGTTCTGTTCTTTTTGGAAATACAAGAATTCGGTCCACAATGGCTGCTGCACACTGTGTTGAACCTCTGGTGTCTCTTCTTGTAAGTGAGTTTAGTCCTGCTCAGCATTCAGTTGTCCGGGCATTGGATAGGCTTGTTGACGATGAACAACTGGCTGAATTAGTTGCTGCACATGGTGCAGTTATTCCTCTTGTTGGCCTACTATATGGTAGGAACTATGTACTTCATGAGGCCATTTCCAGAGCTCTGGTCAAGTTAGGTAAAGACAGGCCAGGTTGTAAAATGGAAATGGTGAGAGCTGGAGTTATTGAAAGCATACTTGATATCCTTCATGAAGCACCTGATTATCTATGTGCAGCTTTTGCAGAATTGCTACGTATATTGACCAATAATGCTAGCATAGCTAAAGGACCATCAGCTGCTAAAGTAGTTGAACCTCTTTTTTTGTTGTTGACAAGACAAGAATTTGGGCCTGATGGACAACATAGTGCATTGCAGGTTTTGGTTAATATCTTAGAACATCCACAGTGTCGAGCTGATTACACATTGACTACTCACCAAGTTATTGAGCCTCTTATCCCCTTGCTTGATTCTCCTATATCAGCAGTGCAACAATTAGCTGCTGAGCTTCTCTCACATCTACTTTTAGAAGAACACCTTCAGAAGGATCCAGTGACACAGCAGGTAATTGGTCCTCTTATACGAGTTCTTGGTTCTGGTATACATATATTGCAGCAGAGAGCTGTAAAGGCCCTGGTCAGTATTGCACTGATATGGCCAAATGAAATTGCAAAAGAGGGTGGTGTTATTGAAATTTCAAAAGTTATATTGCAAGCTGATCCATCCATTCCTCATGCTTTATGGGAGTCAGCTGCCTCTGTTTTGGCAAGTATTCTGCAATTTAGTTCTGAATTCTACCTGGAAGTTCCTGTTGCTGTTTTGGTAAGGCTGCTTCGATCTGGATTAGAAAGCACAGTTGTTGGTGCATTAAATGCTCTTCTTGTGTTGGAAAGTGATGATGGAACAAGTGCAGAAGCAATGGCCGAAAGTGGTGCTATAGAGGCTCTCTTGGAGCTCCTAAGATCTCATCAGTGTGAGGAAACTGCTGCAAGACTCTTAGAAGCACTGCTGAACAATGTAAAGATCAGAGAAACAAAAGTTACTAAATCAGCCATCTTACCCTTGTCCCAGTATCTCTTGGACCCACAAACCCAAGCACAGCAAGCAAGGTTGTTAGCAACTTTGGCTCTTGGTGATCTATTCCAGAATGAGGGTCTTGCTCGGACAAGTGATGCAGTTTCAGCTTGCCGTGCTTTAGTAAATGTGCTTGAAGAGCAACCAACTGAAGAAATGAAAGTTGTCGCCATATGTGCTCTGCAAAATCTTGTGATGTATAGTCGATCAAATAAAAGAGCAGTTGCAGAGGCGGGTGGTGTTCAGGTTGTACTGGATCTGATAGGTTCAAGTGATCCTGAAACATCCGTTCAAGCTGCAATGTTTATCAAACTACTATTTTCAAATCATACAATTCAAGAGTATGCTTCTAGTGAAACAGTGAGAGCAATAACTGCTGCTATTGAGAAGGACTTATGGGCTACTGGAACTGTGAACGATGAGTATCTTAAAGCTTTAAATTCTCTATTTAGCAACTTCCCTCGACTGAGGGCAACTGAACCAGCAACACTTAGCATTCCCCATCTGGTTGCATCCTTAAAGACAGGCTCAGAGGCTACTCAGGAAGCTGCTTTGGATGCTCTTTTCCTGCTGAGGCAAGCTTGGTCAGCATGCCCAGCAGAAGTTTCAAGAGCTCAGTCCATAGCAGCTGCAGATGCTATTCCTTTGCTGCAGTATTTAATCCAGTCTGGCCCACCTCGCTTTCAGGAGAAGGCAGAATTTTTATTGCAGTGTTTGCCTGGAACGTTGGTGGTGATCATCAAGCGTGGTAACAATATGAAGCAGTCTGTTGGAAACCCAAGTGTTTATTGTAAGCTTACACTTGGAAACACTCCTGCAAGGCAAACCAAGGTTGTCTCAACTGGCCCTAATCCGGAGTGGGATGAGAGCTTTACATGGTCCTTTGAGAGTCCTCCAAAAGGCCAGAAACTACACATTTCTTGCAAAAATAAGAGCAAAATGGGAAAGAGCTCATTTGGCAAAGTGACAATCCAGATTGATCGGGTGGTAATGCTTGGAGCGGTGTCTGGGGAGTACACTCTGTTGCCGGAAAGTAAAAATGGTCCCTCAAGAAACTTAGAAATAGAATTTCAATGGTCTAACAAGTGA 6399 0.4277 MERNGDGKAQDSEPSTPPSVLKMGFRERTSSMEDPDGTLASVAQCIEQLRQSSSSVQEKEKSLKQLLELIEMRANAFSALGSHSQAVPVLVSLLRSGSLNVKIQAATVLGSLCKENELRVKVLLGGCIPPLLGLLKSSSSEGQVAAAKTIFAVSQGGAKDHVGSKIFSTEGVVPVLWEQLQKGLKTDNVVDNLLTGALKNLSSSTERFWNATIQAGGVDILIKLLTTGRSSTLANVCFLLACMMIEDASVCSKVLAAEATKQLLKLLGPGNDAPVRAEAAGALKSLSAQCKDARKEIANSNGIPALINATIAPSKEFMQGEYAQALQENAMCALANISGGLSYVISSLGQSLESCSSPAQIADTLGALASALMIYDDKAESNRASDPLVVEESLLKQFKPHLPFLVQERTIEALASLYSNPILSIKLANSEAKRLLVGLITMAASEVQDELLKSLLTLCNSECSLWHALQGREGVQLLISLLGLSSEQQQECAVALLCLLSNENDESKWAITAAGGIPPLVQILESGSAKAKEDSATILRNLCDHSEDIRACVESADAVPALLWLLKNGSPNGKEIAAKTLNHLIHKSDTATISQLTALLTSDLPESKVYVLDALRSMLSIVALSDLLREGSAASDAIDTIIKLLSLTKEETQAKSACALAGIFETRKDVRESRIAVKTLWAAMKLLNVESESILIESSRCLAAIFLSIKENRDVAAIARDALPSLVALANSSVLEVAELATCAVANLILDSEIAEKAVAEEVILPATRVLREGTVSGKTHAAAAIARLLHSRQVDYAVTDCVNRAGTVLGLVSFLDSASTGPGSTSEALEALAILSRSEKISAHSKPAWAVLAEFPKSICPIVLSIANSTPVLQDKAIEILSRLCKDQPFILGDAVATSSGCISSIAKRIINSTSANVKVKIGGAAILICAAKVNHQRLVEDLNLSNLCADLVQSLVDMLISSQAILDNQGDDNKEVISICRHTKEEANDGKSNTGTSIVSGANLAIWLLSVLACHDEKSKVAITEAGAIEVLTDRVANCFSQYSQIDYKEDSSMWICALLMAILFQDRDIIRAHSTMNSIPALANLLKSEESANRYFAAQSIASLVCNGSRGTLLSLANSGAAGGLISLLGCADSDIQDLLELSEEFSLVQYPDQVALERLFRVDDIRVGATSRKAIPALVDLLKPIPERPGAPFLALGLLTQLAVDCPSNKIVMVESGALEALSKYLSLGPQDATEEAATDLLGILFSSAEIRRHESAFGAVTQLVAVLRLGGRAARYRAAKALESLFSADHIRNADSARQAVQPLVEILNTGLEREQHAAIAALVRLLSENPSRALAVADVEMNAVDVLCRILSSDCSMDLKGDAAELCSVLFGNTRIRSTMAAAHCVEPLVSLLVSEFSPAQHSVVRALDRLVDDEQLAELVAAHGAVIPLVGLLYGRNYVLHEAISRALVKLGKDRPGCKMEMVRAGVIESILDILHEAPDYLCAAFAELLRILTNNASIAKGPSAAKVVEPLFLLLTRQEFGPDGQHSALQVLVNILEHPQCRADYTLTTHQVIEPLIPLLDSPISAVQQLAAELLSHLLLEEHLQKDPVTQQVIGPLIRVLGSGIHILQQRAVKALVSIALIWPNEIAKEGGVIEISKVILQADPSIPHALWESAASVLASILQFSSEFYLEVPVAVLVRLLRSGLESTVVGALNALLVLESDDGTSAEAMAESGAIEALLELLRSHQCEETAARLLEALLNNVKIRETKVTKSAILPLSQYLLDPQTQAQQARLLATLALGDLFQNEGLARTSDAVSACRALVNVLEEQPTEEMKVVAICALQNLVMYSRSNKRAVAEAGGVQVVLDLIGSSDPETSVQAAMFIKLLFSNHTIQEYASSETVRAITAAIEKDLWATGTVNDEYLKALNSLFSNFPRLRATEPATLSIPHLVASLKTGSEATQEAALDALFLLRQAWSACPAEVSRAQSIAAADAIPLLQYLIQSGPPRFQEKAEFLLQCLPGTLVVIIKRGNNMKQSVGNPSVYCKLTLGNTPARQTKVVSTGPNPEWDESFTWSFESPPKGQKLHISCKNKSKMGKSSFGKVTIQIDRVVMLGAVSGEYTLLPESKNGPSRNLEIEFQWSNK* 2133
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr10g2183 2132 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 515 557 IPR000225 GO:0005515
Apr10g2183 2132 Pfam C2 domain 2011 2107 IPR000008 -
Apr10g2183 2132 Gene3D - 1803 2007 IPR011989 -
Apr10g2183 2132 SUPERFAMILY ARM repeat 593 959 IPR016024 -
Apr10g2183 2132 PANTHER CELLULOSE SYNTHASE-INTERACTIVE PROTEIN 5 2132 - -
Apr10g2183 2132 ProSiteProfiles C2 domain profile. 1992 2109 IPR000008 -
Apr10g2183 2132 Gene3D - 396 592 IPR011989 -
Apr10g2183 2132 PANTHER PROTEIN CELLULOSE SYNTHASE INTERACTIVE 1 5 2132 IPR044297 GO:0008017|GO:0010330|GO:0051211|GO:2001006
Apr10g2183 2132 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 2010 2129 IPR035892 -
Apr10g2183 2132 Coils Coil 276 296 - -
Apr10g2183 2132 Gene3D - 1507 1681 IPR011989 -
Apr10g2183 2132 SUPERFAMILY ARM repeat 1561 2009 IPR016024 -
Apr10g2183 2132 MobiDBLite consensus disorder prediction 1 36 - -
Apr10g2183 2132 SUPERFAMILY ARM repeat 869 1141 IPR016024 -
Apr10g2183 2132 Pfam Armadillo/beta-catenin-like repeat 83 113 IPR000225 GO:0005515
Apr10g2183 2132 Pfam Armadillo/beta-catenin-like repeat 504 544 IPR000225 GO:0005515
Apr10g2183 2132 SMART arm_5 1165 1208 IPR000225 GO:0005515
Apr10g2183 2132 SMART arm_5 546 586 IPR000225 GO:0005515
Apr10g2183 2132 SMART arm_5 73 114 IPR000225 GO:0005515
Apr10g2183 2132 SMART arm_5 1462 1502 IPR000225 GO:0005515
Apr10g2183 2132 SMART arm_5 247 288 IPR000225 GO:0005515
Apr10g2183 2132 SMART arm_5 504 544 IPR000225 GO:0005515
Apr10g2183 2132 SMART arm_5 1379 1419 IPR000225 GO:0005515
Apr10g2183 2132 SMART arm_5 1711 1750 IPR000225 GO:0005515
Apr10g2183 2132 SMART arm_5 1838 1878 IPR000225 GO:0005515
Apr10g2183 2132 SMART arm_5 290 339 IPR000225 GO:0005515
Apr10g2183 2132 SMART arm_5 463 502 IPR000225 GO:0005515
Apr10g2183 2132 SMART arm_5 115 155 IPR000225 GO:0005515
Apr10g2183 2132 SMART arm_5 712 750 IPR000225 GO:0005515
Apr10g2183 2132 SMART arm_5 625 665 IPR000225 GO:0005515
Apr10g2183 2132 SMART arm_5 1549 1588 IPR000225 GO:0005515
Apr10g2183 2132 SMART arm_5 1210 1251 IPR000225 GO:0005515
Apr10g2183 2132 SMART arm_5 1420 1460 IPR000225 GO:0005515
Apr10g2183 2132 SUPERFAMILY ARM repeat 1298 1635 IPR016024 -
Apr10g2183 2132 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 1177 1221 IPR000225 GO:0005515
Apr10g2183 2132 Gene3D - 1163 1346 IPR011989 -
Apr10g2183 2132 Gene3D - 1347 1506 IPR011989 -
Apr10g2183 2132 Gene3D C2 domain 2009 2132 IPR035892 -
Apr10g2183 2132 Gene3D - 31 386 IPR011989 -
Apr10g2183 2132 SMART C2_3c 2012 2108 IPR000008 -
Apr10g2183 2132 CDD C2 2013 2103 - -
Apr10g2183 2132 SUPERFAMILY ARM repeat 196 587 IPR016024 -
Apr10g2183 2132 Gene3D - 593 800 IPR011989 -
Apr10g2183 2132 SUPERFAMILY ARM repeat 1167 1360 IPR016024 -
Apr10g2183 2132 SUPERFAMILY ARM repeat 46 202 IPR016024 -
Apr10g2183 2132 Gene3D - 801 1162 IPR011989 -
Apr10g2183 2132 Gene3D - 1682 1802 IPR011989 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr10g2183 Apr-Chr10 34301568 34311681 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr10g2183 477 599 U-box Gene Family AT2G23140 41.935 4.90e-12 69.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr10g2183 - - gmx:100818900 3731.03
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr8g1200 8 16930893 16940937 Apr10g2183 10 34301568 34311681 PCT