Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr10g2179 ATGACACCTCTCTCTAAGCTCTTCAACAAGCTTTGTGGGAAAGCTATACTCCTATTAGCATACTTGCTAATAGAACTCTTCATCCTCATTCAGAAGCTAAGGTCACGTCCAATTACCACCCGGCAATACCTCAAATTCATTGAGAAGAAGAACCCCACGATTTGCTACACCAAAAGATTGAAGGGAGAGAACGTTGTAGAGTGTAGTGTGTGCTTATCCGAATTCAAGGAAGGGGAGAAGGTGAGGAGCTTGAAATGCAAACACACATTCCACAAGGATTGCTTGGACAAGTGGTTGCAAGAATATTGGGCTACATGCCCACTTTGTAGGAAACCAGTGTTGCCACATGATGTTGTGTCCAAACATCGTCAGCATCGAAATCAGGAAGAGGCAGGTTCTAATGGGAGCAATCACCACCACCTTCCTTTTCTTTTGTCAGCATTTCGCAGTAATAACACTTTGCATAGATATCTCTGA 477 0.434 MTPLSKLFNKLCGKAILLLAYLLIELFILIQKLRSRPITTRQYLKFIEKKNPTICYTKRLKGENVVECSVCLSEFKEGEKVRSLKCKHTFHKDCLDKWLQEYWATCPLCRKPVLPHDVVSKHRQHRNQEEAGSNGSNHHHLPFLLSAFRSNNTLHRYL* 159
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr10g2179 158 SMART ring_2 68 109 IPR001841 -
Apr10g2179 158 ProSiteProfiles Zinc finger RING-type profile. 68 110 IPR001841 -
Apr10g2179 158 Pfam Ring finger domain 67 110 IPR001841 -
Apr10g2179 158 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 1 153 - -
Apr10g2179 158 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 31 115 IPR013083 -
Apr10g2179 158 SUPERFAMILY RING/U-box 46 116 - -
Apr10g2179 158 PANTHER - 1 153 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr10g2179 Apr-Chr10 34267207 34267687 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr10g2179 67 129 C3H Transcription Factor Family AT1G15100 49.206 2.32e-18 75.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr10g2179 K16282 - gmx:102668078 234.572
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr8g1196 8 16903093 16903563 Apr10g2179 10 34267207 34267687 PCT