Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr10g2177 ATGAATTCACCATCTCCACAGTTTGTTTCCTCAAGAAGGATGAGTGTCTACGATCCTATTCATCAGATTAGTATGTGGGGAGAGAGCTTCAAAACTAATGGTAATTTAGGAGCAGCCATACCATTAATTGATGAGGCAGACATGAAATTGGATAGTCAGTCAGAGGATGCTTCTCATGGTATACTGGGAACACCTAACAAGTATGACCAAGAAGCTAATAAGCCTAATGAAAAGATACAAAGACGTCTTGCACAAAATCGAGAGGCTGCTCGTAAGAGCCGTTTGCGGAAAAAGGCATATGTGCAGCAATTAGAATCAAGTCGTTTGAAGTTGATGCAGTTGGAGCAAGAGCTTGAACGTGCAAGACAACAGGGAATGTATATAGGAGGTGGGTTGGATTCTAATCATCTGGGTTTTGCTGGATCTGTAAATTCAGGAATTACAACCTTTGAGATGGAGTATGGACATTGGGTGAATGAGCAAACTAGACAAATCTCAGAACTGAGAAATGCTTTGAATGCTCATATTGGTGACATGGAGCTCAGGATTTTGGTAGATGGTATGATGAACCACTATGCTGAAATATTTCGCATGAAATCTGCTGCTGCAAAAGCAGATGTTTTCTATGTTATGTCCGGTATGTGGAAAACAACAGCTGAAAGATTTTTCTTATGGATAGGAGGTTTTCGCCCCTCTGAGCTTCTTAAGGTTCTTGGTCCCTTGATTGAACCATTAACGGAGCAACAACGGTTGGATATCTATAACCTTGGACAATCATGTCAGCAAGCAGAGGATGCCCTTTCACAAGGTATGGACAAACTCCGCCAAACACTAGCTGATAGTGTAGCTGCTGGACAATTCATGGAAGGAACTTATAGTCAACAAATGACTATTGCAAAGGAGAAGTTGGAAGCTCTCGTGAGCTTTGTGAACCAGAATCTCACAACTTGGATAAAGCATAGTCCAAGGCATCCACAACAAAATCTGCACAACAAGAGGCCAGTCAATCAATGGACTTAA 1020 0.4157 MNSPSPQFVSSRRMSVYDPIHQISMWGESFKTNGNLGAAIPLIDEADMKLDSQSEDASHGILGTPNKYDQEANKPNEKIQRRLAQNREAARKSRLRKKAYVQQLESSRLKLMQLEQELERARQQGMYIGGGLDSNHLGFAGSVNSGITTFEMEYGHWVNEQTRQISELRNALNAHIGDMELRILVDGMMNHYAEIFRMKSAAAKADVFYVMSGMWKTTAERFFLWIGGFRPSELLKVLGPLIEPLTEQQRLDIYNLGQSCQQAEDALSQGMDKLRQTLADSVAAGQFMEGTYSQQMTIAKEKLEALVSFVNQNLTTWIKHSPRHPQQNLHNKRPVNQWT* 340
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr10g2177 339 Pfam bZIP transcription factor 78 112 IPR004827 GO:0003700|GO:0006355
Apr10g2177 339 Coils Coil 97 124 - -
Apr10g2177 339 Pfam Seed dormancy control 164 238 IPR025422 GO:0006351|GO:0043565
Apr10g2177 339 SUPERFAMILY Leucine zipper domain 78 120 IPR046347 GO:0003700|GO:0006355
Apr10g2177 339 PANTHER TRANSCRIPTION FACTOR TGA9 1 313 - -
Apr10g2177 339 CDD bZIP_HBP1b-like 78 130 - -
Apr10g2177 339 SMART brlzneu 74 134 IPR004827 GO:0003700|GO:0006355
Apr10g2177 339 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 76 120 IPR004827 GO:0003700|GO:0006355
Apr10g2177 339 PANTHER TRANSCRIPTION FACTOR TGA1 1 313 - -
Apr10g2177 339 MobiDBLite consensus disorder prediction 53 74 - -
Apr10g2177 339 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 81 96 IPR004827 GO:0003700|GO:0006355
Apr10g2177 339 ProSiteProfiles DOG1 domain profile. 147 339 IPR025422 GO:0006351|GO:0043565
Apr10g2177 339 Gene3D - 76 126 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr10g2177 Apr-Chr10 34242127 34248475 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr10g2177 1 312 Calmodulin-binding Proteins AT5G10030 67.516 1.06e-153 434
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Apr10g2177 DOG1 8.2e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr10g2177 K14431 - gmx:100793353 571.237
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr8g1193 8 16868004 16877208 Apr10g2177 10 34242127 34248475 PCT