Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr10g2170 ATGGAGAAAAGGGGTAATGTATTGATGCATAAGTATGAGTTTGGAAAACTATTAGGCCAAGGAAACTTTGCAAAGGTTTACCATGCAAGGGACCTCAGAAGTGGTGAGAATGTTGCCATTAAGGTGATTGACAAGGAGAAAGTTCTTAAAGTTGGGCTGGTGGATCAAACAAAGCGTGAGATATCTATCATGAAACTTGTTAAACACCCAAATGTTTTGCAGCTTTATGAGGTCTTGGCCACCAAAACCAAGATTTACTTCATCATAGAATATGCCAAAGGGGGTGAACTTTTCAACAAGGTAGCTAAAGGTAGACTCCATGAGGACAAGGCAAGGAAGTACTTTCAACAATTGATCAGTGCTGTTGATTTTTGCCACAGCAGGGGTGTTTATCACAGGGATTTGAAGCCAGAGAACTTGCTTTTGGATGAGAATGGAGTTCTCAAGGTAGCAGATTTTGGATTGAGTGCACTTGTTGAATCTCATCGTCAAGGCAACATGCTGCATACAGTTTGTGGAACTCCTGCATATGTAGCTCCTGAGGTTATAAGTAGAAAGGGTTATGATGGAGCAAAAGCAGATGTATGGTCTTGCGGAGTGATATTATTTGTTCTTTTGGCTGGCCATTTGCCATTCTATGATTTGAATCTTATGTCACTGTATAAGAAAATAGGCAAGGCAGATTACAAATGTCCAAACTGGTTTTCATTTGAAGTGCGTAGACTATTGGCAAGAATCCTCGATCCCAACCCAGATACTAGGATATCCACGGCAAAAGTCTTGGAAAATTCTTGGTTCAGAAAAGGATTCAAATCCAAATTTGATCAAGTGAAAAGAGGGGCTACAAATGTGGCTTTAGTTGATTCTGATCAAGTTCTTGGTTTGTGTGAGAACAGAAGTGCTGCTGTTGAGGCTGATCAAGTATTAGTTAAGCCTACAAATTTAAATGCTTTTGATATAATTTCTCTGTCCTCTGGGCTTGACTTGTCTGGCCTTTTTGCTAGCAATGATGGACAGGAAGATATCAAATTTACATTCATGAGCTCTGCCTCATCCATCATGTCTACAATGGAGGATATTGCTGGCATTCTGAGGATGGAGATAACTAAGAAGGATGGAGGGTTACTGAAATTGGAGAGATCCAGGGAAGATAGAAAAGGGCTTCTATCCATTGATGCCGAAATTTTTGAGCTGACCCCAGCTTTCCATTTGGTTGAGATGAAGAAGTCCTGTGGTGATACATTAGAATACCAGAAGATATTGAAGGAGGATATAAGACCTGCACTCAAAGATATTGTCTGCATTTGGCAAGGTGAGCAGCAACAGCAGTAG 1332 0.4054 MEKRGNVLMHKYEFGKLLGQGNFAKVYHARDLRSGENVAIKVIDKEKVLKVGLVDQTKREISIMKLVKHPNVLQLYEVLATKTKIYFIIEYAKGGELFNKVAKGRLHEDKARKYFQQLISAVDFCHSRGVYHRDLKPENLLLDENGVLKVADFGLSALVESHRQGNMLHTVCGTPAYVAPEVISRKGYDGAKADVWSCGVILFVLLAGHLPFYDLNLMSLYKKIGKADYKCPNWFSFEVRRLLARILDPNPDTRISTAKVLENSWFRKGFKSKFDQVKRGATNVALVDSDQVLGLCENRSAAVEADQVLVKPTNLNAFDIISLSSGLDLSGLFASNDGQEDIKFTFMSSASSIMSTMEDIAGILRMEITKKDGGLLKLERSREDRKGLLSIDAEIFELTPAFHLVEMKKSCGDTLEYQKILKEDIRPALKDIVCIWQGEQQQQ* 444
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr10g2170 443 ProSiteProfiles NAF domain profile. 310 334 IPR018451 GO:0007165
Apr10g2170 443 CDD CIPK_C 316 430 - -
Apr10g2170 443 SMART serkin_6 12 266 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr10g2170 443 Pfam NAF domain 312 370 IPR004041 GO:0007165
Apr10g2170 443 Gene3D Kinase associated domain 1, KA1 316 434 - -
Apr10g2170 443 ProSitePatterns Protein kinases ATP-binding region signature. 18 41 IPR017441 GO:0005524
Apr10g2170 443 SUPERFAMILY Protein kinase-like (PK-like) 8 287 IPR011009 -
Apr10g2170 443 PANTHER - 2 441 - -
Apr10g2170 443 Pfam Protein kinase domain 12 266 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr10g2170 443 PANTHER NON-SPECIFIC SERINE/THREONINE PROTEIN KINASE 2 441 - -
Apr10g2170 443 Gene3D Transferase(Phosphotransferase) domain 1 4 315 - -
Apr10g2170 443 ProSiteProfiles Protein kinase domain profile. 12 266 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr10g2170 443 ProSitePatterns Serine/Threonine protein kinases active-site signature. 130 142 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr10g2170 Apr-Chr10 34205065 34207337 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr10g2170 1 442 CBL-interacting serine-threonine protein kinases AT5G58380 59.560 0.0 572
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMKL-CHK1 Apr10g2170 Pkinase 6.7e-73 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr10g2170 K07198 - gmx:100816254 755.362