Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr10g2166 ATGGATTGTTGTGTCTGCACAACTATGCCATTAATATTAAGGCCTCCCAGGAACACGATATGTGGGTCGTGCTATGAAGGAGTTAGGAGCATAATCAACATGATGAATAGTGTCGACAGTGAGAAAGCAAAAGCAATCGCTAATCCAAACGGTTCTCCAGTTTCACGGCGAAATTCGAGTAAGACACTTGATGATTGTATAAGATGGTGTACGGAGCAGATAGACCAGTTTAATCAACAAAAAGAAGACTTGGCTTTCCTCAGAGGCTTTATTACTGCCTTCAAAACACAGATTCATACGGATATATTGATCACCCCAGGAAGGCAAGGTCCACCTATACCTGCACATAAGTCCGTTTTGGCGGCAAGATCAGAAATATTTAAGAACATGCTAGAGTGTGATGAATGCAAAGCTCCACCAAATAACACCATAACTATACCCGATTTGAACCATGAAGAACTAGAGTCTCTATTGGAGTTTCTCTATAGTGGGACATTGGGTGCGGAAAAATTGGAGAAACATGTCTACGCCCTGTCACAAGCAGCTGATAAGTATGTGATTCCACACTTGCTGAAACAGTGTGAACGATATCTGCTAAGTTCACTAAGCATTTCTAATGCCTTTGAGACACTGGAAATTGCGGACACTTGTTCCAACCACAACTTGAAGGAGACAACCTTTAATTTCTTAGTTAAAAACATTGAACACATGGTGTCATCTCCTAAATTTGAAGCTTTTGTGCATAGGAGTCCACATTTAACTGTGCAACTAGTTACAAGGGCATTTGTCAACGGAGCCAAATAA 804 0.4092 MDCCVCTTMPLILRPPRNTICGSCYEGVRSIINMMNSVDSEKAKAIANPNGSPVSRRNSSKTLDDCIRWCTEQIDQFNQQKEDLAFLRGFITAFKTQIHTDILITPGRQGPPIPAHKSVLAARSEIFKNMLECDECKAPPNNTITIPDLNHEELESLLEFLYSGTLGAEKLEKHVYALSQAADKYVIPHLLKQCERYLLSSLSISNAFETLEIADTCSNHNLKETTFNFLVKNIEHMVSSPKFEAFVHRSPHLTVQLVTRAFVNGAK* 268
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr10g2166 267 ProSiteProfiles BTB domain profile. 100 170 IPR000210 GO:0005515
Apr10g2166 267 SMART BTB_4 100 202 IPR000210 GO:0005515
Apr10g2166 267 Gene3D Potassium Channel Kv1.1; Chain A 69 202 IPR011333 -
Apr10g2166 267 PANTHER BTB/POZ DOMAIN CONTAINING PROTEIN, EXPRESSED 1 266 - -
Apr10g2166 267 SUPERFAMILY POZ domain 86 201 IPR011333 -
Apr10g2166 267 Gene3D - 203 265 - -
Apr10g2166 267 PANTHER BTB/POZ DOMAIN CONTAINING PROTEIN, EXPRESSED-RELATED 1 266 IPR044784 -
Apr10g2166 267 Pfam BTB/POZ domain 95 201 IPR000210 GO:0005515
Apr10g2166 267 CDD BACK 203 243 - -
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Apr10g2166 BTB 8.1e-21 CL0033
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr10g2166 K10523 - gmx:100777561 489.96
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr10g2166 10 34174086 34176107 Apr10g2166 10 34174086 34176107 ECH