Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Apr10g2145 | ATGGATTCCGATTTCCCCAACAGAGCGTTGACGAACACGCGCTTTTCCGAGCTGAACCCGCCACTCTCCGACGGGGTTCTCCAGGCCCTATCAAACTCCGGTTTCGACTTCTGCACACCGGTTCAAGCCGCCACAATCCCTTTACTTTGCAGCTTCAAGGACGTCGCCGTCGACGCCGCCACCGGTTCTGGAAAAACCCTAGCGTTTGTTGTTCCACTTGTTGAGATTCTTCGACGCTCCTCTTCTCGTCCCAAGCCTCATCAGGTACTAGGAATAATTATATCACCTACAAGGGAGTTATCATCCCAAATATATCATGTTGCACAACCTTTCATCTCGACGTTAGTGAATATTAAGTCCATGCTCCTTGTTGGTGGAGTAGAAGTAAAAGCAGACATGAAGAAAATAGAGGAGGAAGGAGCAAACATATTGATTGGCACGCCTGGTCGGCTATATGACATAATGAATCGGATGGATGTCTTGGAATTTAAAAGCCTTGAGATTTTGATTCTTGATGAGGCTGATAGACTCTTAGATATGGGATTCCAGAAGCAAATAACTGCTATTATATCCCACTTGCCTAAGCTTCGTAGAACTGGTCTATTTTCTGCTACTCAAACTGAGGCTGTTGAAGAGCTTTCTAAGGCAGGATTGAGGAACCCTTACTTGGAATGCGACGCAGATAAGAAGCCATCACAGCTGGTAGATATCCTTATTAAGAACCGCTCAAGAAAAATTATAATATATTTCATGACTTGTGCTTGCGTTGATTATTGGGGAGTTGTCCTTCCTTGCCTTCCTGTTTTGAAAGGTTTCTCCTTGATCCCCCTACATGGAAAGATGAAGCAGTCTGCCAGGGAGAAAGCACTAGCTTCATTTACATCCCTTTCAAGTGGCATTCTTCTATGTACGGATGTTGCAGCACGTGGACTCGACATACCGGGTGTAGATTGTATAGTGCAGATTCGCTCTGCTGCAAAAAAAGATCGTGATGTCATGGAGAAGGGAGTCAAGGCTTTTGTTTCTTACATCCGTGCTTATAAAGAGCATCACTGCTCTTATATTTTTAGGTGGAAAGAACTTGAAATTGGCAAATTGGCCACGGGATATGGCTTATTGCAACTTCCTTCAATGCCAGAGGTAAAACATCACTCACTTTCCACTGATGGATTTGAACCAGTTGAAGATATCAATCTGGGGGACATTAAGTACAGGGATAAATCACGAGAGAAACAAAGGAAGAAGAACCTGCAAGCAAAGAAAGAAGCCAAAGAGAAAGAGCCGAAACCTCAAAAACTAAGCAAAACCCAAAATGCACCTACTGTCATGCGGAAGAAAACAGCTCGACAGAGACGTGCTCAGCAGACAATTGAAGATGAGGAAGAGTTGATGCAAGAATACCGCCTGTTGAAGAAATTGAAAAAAGGAACCATAGATGAGAATGAATATGCCAAGTTGACGGGCACTGAGGAATTACTTTGA | 1482 | 0.4386 | MDSDFPNRALTNTRFSELNPPLSDGVLQALSNSGFDFCTPVQAATIPLLCSFKDVAVDAATGSGKTLAFVVPLVEILRRSSSRPKPHQVLGIIISPTRELSSQIYHVAQPFISTLVNIKSMLLVGGVEVKADMKKIEEEGANILIGTPGRLYDIMNRMDVLEFKSLEILILDEADRLLDMGFQKQITAIISHLPKLRRTGLFSATQTEAVEELSKAGLRNPYLECDADKKPSQLVDILIKNRSRKIIIYFMTCACVDYWGVVLPCLPVLKGFSLIPLHGKMKQSAREKALASFTSLSSGILLCTDVAARGLDIPGVDCIVQIRSAAKKDRDVMEKGVKAFVSYIRAYKEHHCSYIFRWKELEIGKLATGYGLLQLPSMPEVKHHSLSTDGFEPVEDINLGDIKYRDKSREKQRKKNLQAKKEAKEKEPKPQKLSKTQNAPTVMRKKTARQRRAQQTIEDEEELMQEYRLLKKLKKGTIDENEYAKLTGTEELL* | 494 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Apr10g2145 | 493 | MobiDBLite | consensus disorder prediction | 402 | 460 | - | - | |
Apr10g2145 | 493 | Pfam | DEAD/DEAH box helicase | 39 | 213 | IPR011545 | GO:0003676|GO:0005524 | |
Apr10g2145 | 493 | Pfam | Domain of unknown function (DUF4217) | 321 | 378 | IPR025313 | - | |
Apr10g2145 | 493 | Coils | Coil | 407 | 427 | - | - | |
Apr10g2145 | 493 | ProSiteProfiles | Superfamilies 1 and 2 helicase C-terminal domain profile. | 233 | 434 | IPR001650 | - | |
Apr10g2145 | 493 | SMART | DUF4217_3 | 317 | 380 | IPR025313 | - | |
Apr10g2145 | 493 | CDD | DEADc_DDX55 | 26 | 221 | - | - | |
Apr10g2145 | 493 | ProSiteProfiles | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 46 | 224 | IPR014001 | - | |
Apr10g2145 | 493 | PANTHER | RNA HELICASE | 25 | 491 | - | - | |
Apr10g2145 | 493 | SMART | helicmild6 | 257 | 347 | IPR001650 | - | |
Apr10g2145 | 493 | PANTHER | ATP-DEPENDENT RNA HELICASE DDX55 | 25 | 491 | - | - | |
Apr10g2145 | 493 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 217 | 323 | IPR027417 | - | |
Apr10g2145 | 493 | SMART | ultradead3 | 34 | 238 | IPR014001 | - | |
Apr10g2145 | 493 | Pfam | Helicase conserved C-terminal domain | 230 | 324 | IPR001650 | - | |
Apr10g2145 | 493 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 12 | 222 | IPR027417 | - | |
Apr10g2145 | 493 | Gene3D | - | 221 | 345 | IPR027417 | - | |
Apr10g2145 | 493 | Coils | Coil | 443 | 470 | - | - | |
Apr10g2145 | 493 | MobiDBLite | consensus disorder prediction | 402 | 432 | - | - | |
Apr10g2145 | 493 | CDD | SF2_C_DEAD | 222 | 321 | - | - | |
Apr10g2145 | 493 | ProSitePatterns | DEAD-box subfamily ATP-dependent helicases signature. | 170 | 178 | IPR000629 | - | |
Apr10g2145 | 493 | Gene3D | - | 4 | 220 | IPR027417 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Apr10g2145 | Apr-Chr10 | 34039633 | 34044757 | Transposed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Apr10g2145 | 17 | 322 | Eukaryotic Initiation Factors Gene Family | AT1G72730 | 28.923 | 1.79e-31 | 124 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Apr10g2145 | K14809 | - | cit:102613104 | 691.034 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Apr10g2145 | 10 | 34039633 | 34044757 | Apr10g2145 | 10 | 34039633 | 34044757 | ECH |