Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr10g2145 ATGGATTCCGATTTCCCCAACAGAGCGTTGACGAACACGCGCTTTTCCGAGCTGAACCCGCCACTCTCCGACGGGGTTCTCCAGGCCCTATCAAACTCCGGTTTCGACTTCTGCACACCGGTTCAAGCCGCCACAATCCCTTTACTTTGCAGCTTCAAGGACGTCGCCGTCGACGCCGCCACCGGTTCTGGAAAAACCCTAGCGTTTGTTGTTCCACTTGTTGAGATTCTTCGACGCTCCTCTTCTCGTCCCAAGCCTCATCAGGTACTAGGAATAATTATATCACCTACAAGGGAGTTATCATCCCAAATATATCATGTTGCACAACCTTTCATCTCGACGTTAGTGAATATTAAGTCCATGCTCCTTGTTGGTGGAGTAGAAGTAAAAGCAGACATGAAGAAAATAGAGGAGGAAGGAGCAAACATATTGATTGGCACGCCTGGTCGGCTATATGACATAATGAATCGGATGGATGTCTTGGAATTTAAAAGCCTTGAGATTTTGATTCTTGATGAGGCTGATAGACTCTTAGATATGGGATTCCAGAAGCAAATAACTGCTATTATATCCCACTTGCCTAAGCTTCGTAGAACTGGTCTATTTTCTGCTACTCAAACTGAGGCTGTTGAAGAGCTTTCTAAGGCAGGATTGAGGAACCCTTACTTGGAATGCGACGCAGATAAGAAGCCATCACAGCTGGTAGATATCCTTATTAAGAACCGCTCAAGAAAAATTATAATATATTTCATGACTTGTGCTTGCGTTGATTATTGGGGAGTTGTCCTTCCTTGCCTTCCTGTTTTGAAAGGTTTCTCCTTGATCCCCCTACATGGAAAGATGAAGCAGTCTGCCAGGGAGAAAGCACTAGCTTCATTTACATCCCTTTCAAGTGGCATTCTTCTATGTACGGATGTTGCAGCACGTGGACTCGACATACCGGGTGTAGATTGTATAGTGCAGATTCGCTCTGCTGCAAAAAAAGATCGTGATGTCATGGAGAAGGGAGTCAAGGCTTTTGTTTCTTACATCCGTGCTTATAAAGAGCATCACTGCTCTTATATTTTTAGGTGGAAAGAACTTGAAATTGGCAAATTGGCCACGGGATATGGCTTATTGCAACTTCCTTCAATGCCAGAGGTAAAACATCACTCACTTTCCACTGATGGATTTGAACCAGTTGAAGATATCAATCTGGGGGACATTAAGTACAGGGATAAATCACGAGAGAAACAAAGGAAGAAGAACCTGCAAGCAAAGAAAGAAGCCAAAGAGAAAGAGCCGAAACCTCAAAAACTAAGCAAAACCCAAAATGCACCTACTGTCATGCGGAAGAAAACAGCTCGACAGAGACGTGCTCAGCAGACAATTGAAGATGAGGAAGAGTTGATGCAAGAATACCGCCTGTTGAAGAAATTGAAAAAAGGAACCATAGATGAGAATGAATATGCCAAGTTGACGGGCACTGAGGAATTACTTTGA 1482 0.4386 MDSDFPNRALTNTRFSELNPPLSDGVLQALSNSGFDFCTPVQAATIPLLCSFKDVAVDAATGSGKTLAFVVPLVEILRRSSSRPKPHQVLGIIISPTRELSSQIYHVAQPFISTLVNIKSMLLVGGVEVKADMKKIEEEGANILIGTPGRLYDIMNRMDVLEFKSLEILILDEADRLLDMGFQKQITAIISHLPKLRRTGLFSATQTEAVEELSKAGLRNPYLECDADKKPSQLVDILIKNRSRKIIIYFMTCACVDYWGVVLPCLPVLKGFSLIPLHGKMKQSAREKALASFTSLSSGILLCTDVAARGLDIPGVDCIVQIRSAAKKDRDVMEKGVKAFVSYIRAYKEHHCSYIFRWKELEIGKLATGYGLLQLPSMPEVKHHSLSTDGFEPVEDINLGDIKYRDKSREKQRKKNLQAKKEAKEKEPKPQKLSKTQNAPTVMRKKTARQRRAQQTIEDEEELMQEYRLLKKLKKGTIDENEYAKLTGTEELL* 494
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr10g2145 493 MobiDBLite consensus disorder prediction 402 460 - -
Apr10g2145 493 Pfam DEAD/DEAH box helicase 39 213 IPR011545 GO:0003676|GO:0005524
Apr10g2145 493 Pfam Domain of unknown function (DUF4217) 321 378 IPR025313 -
Apr10g2145 493 Coils Coil 407 427 - -
Apr10g2145 493 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 233 434 IPR001650 -
Apr10g2145 493 SMART DUF4217_3 317 380 IPR025313 -
Apr10g2145 493 CDD DEADc_DDX55 26 221 - -
Apr10g2145 493 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 46 224 IPR014001 -
Apr10g2145 493 PANTHER RNA HELICASE 25 491 - -
Apr10g2145 493 SMART helicmild6 257 347 IPR001650 -
Apr10g2145 493 PANTHER ATP-DEPENDENT RNA HELICASE DDX55 25 491 - -
Apr10g2145 493 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 217 323 IPR027417 -
Apr10g2145 493 SMART ultradead3 34 238 IPR014001 -
Apr10g2145 493 Pfam Helicase conserved C-terminal domain 230 324 IPR001650 -
Apr10g2145 493 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 12 222 IPR027417 -
Apr10g2145 493 Gene3D - 221 345 IPR027417 -
Apr10g2145 493 Coils Coil 443 470 - -
Apr10g2145 493 MobiDBLite consensus disorder prediction 402 432 - -
Apr10g2145 493 CDD SF2_C_DEAD 222 321 - -
Apr10g2145 493 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 170 178 IPR000629 -
Apr10g2145 493 Gene3D - 4 220 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr10g2145 Apr-Chr10 34039633 34044757 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr10g2145 17 322 Eukaryotic Initiation Factors Gene Family AT1G72730 28.923 1.79e-31 124
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr10g2145 K14809 - cit:102613104 691.034
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr10g2145 10 34039633 34044757 Apr10g2145 10 34039633 34044757 ECH