Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr10g2143 ATGGCTGGGAATTCCCCATGTGCTTCATGCAAGCTTCTGAGACGCCGCTGTGCTAAAGATTGCATCTTTGCTCCTTATTTCCCTTCTGATGATCCTCAGAAGTTCGCCTTAGTTCACAAGGTTTTTGGTGCAAGCAACGTTAGTAAAATGTTACAGGAACTTGCGGTTCATCAAAGAGCAGATGCAGTTAGCAGTTTAGTGTATGAAGCACATGCAAGAGTTCGAGATCCAGTGTATGGTTGTGTTGGAGCCATATCTTATTTGCAAAACCAAGTCTCTGAGCTTCAAATGCAGCTTGCAGTGGCACAAGCAGAGATACTCTGCATCCAGATGCAACATGAACCAATGATGCCTAATCCAGAAATTGAAGAAGACCCAAATCACAAATCTTACCTTCTCCAAAATGACATCCCTCAATACCTCAACCATGCCTCATCTAACAATGTAATTTATGATTCTCTCTCAAGAGAGACCATATTTGGACATGACATAGTTTCTTGA 501 0.4212 MAGNSPCASCKLLRRRCAKDCIFAPYFPSDDPQKFALVHKVFGASNVSKMLQELAVHQRADAVSSLVYEAHARVRDPVYGCVGAISYLQNQVSELQMQLAVAQAEILCIQMQHEPMMPNPEIEEDPNHKSYLLQNDIPQYLNHASSNNVIYDSLSRETIFGHDIVS* 167
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr10g2143 166 Coils Coil 85 105 - -
Apr10g2143 166 Pfam Lateral organ boundaries (LOB) domain 6 103 IPR004883 -
Apr10g2143 166 ProSiteProfiles LOB domain profile. 5 106 IPR004883 -
Apr10g2143 166 PANTHER LOB DOMAIN-CONTAINING PROTEIN 12-LIKE 1 159 - -
Apr10g2143 166 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 1 159 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr10g2143 Apr-Chr10 34025780 34026607 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr10g2143 3 133 AS2 family AT2G30130 81.955 1.39e-75 222
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Apr10g2143 LOB 6.2e-42 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr10g2143 - - gmx:121173085 305.449
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr9g1455 9 24157834 24158496 Apr10g2143 10 34025780 34026607 ECH
Apr10g2143 10 34025780 34026607 Apr10g2143 10 34025780 34026607 ECH
Apr10g2143 10 34025780 34026607 Apr9g1455 9 24157834 24158496 PCT