Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr10g2132 ATGAAGAGTTATGAGCCCCGTTCAAGCTCTTCATGTGCAGCTTGCAAGTTGTTGAAAAGAAGATGCATACCCAATTGTATTTTTGCACCTTACTTTCGGTCCGATGAGTGTAAGAAATTTGCAAAGGTGCACAAGGTGTTTGGAGCCAGCAATGTGAGCAAGATCCTCATTGAAGTTCCAGAAGAGCAGAGGGAAGACACAGTGAATTCTCTTGCATATGAGGCAGAGGCAAGGCTTAGAGACCCAGTTTATGGATGCATTGGTGCCATAGCCCTTTTGCAAAGGAAGATGGTGGAGCTTCAACATGACTTGGCCATTGCTAAGGATCGTCTTGCTCGTTGTCATGCTGCTGCTTCTGCTGCTACCAACCCTTCTCCTGATATCTTGCTTGCCCATGTTAGCTTGCCCCCCTTCCCTGACTTTTCCACTTCCACTGATTTCAATGATATCTTCTGCCACAGTTCTTCATCTCAATTATTGAACCGACATGAAACGGTGGATGATTTCAATCAAATCCCATATATATTTTAA 531 0.4426 MKSYEPRSSSSCAACKLLKRRCIPNCIFAPYFRSDECKKFAKVHKVFGASNVSKILIEVPEEQREDTVNSLAYEAEARLRDPVYGCIGAIALLQRKMVELQHDLAIAKDRLARCHAAASAATNPSPDILLAHVSLPPFPDFSTSTDFNDIFCHSSSSQLLNRHETVDDFNQIPYIF* 177
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr10g2132 176 ProSiteProfiles LOB domain profile. 10 111 IPR004883 -
Apr10g2132 176 Coils Coil 90 110 - -
Apr10g2132 176 Pfam Lateral organ boundaries (LOB) domain 11 108 IPR004883 -
Apr10g2132 176 PANTHER LOB DOMAIN-CONTAINING PROTEIN 21 1 171 - -
Apr10g2132 176 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 1 171 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr10g2132 Apr-Chr10 33955364 33956214 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr10g2132 1 141 AS2 family AT3G11090 67.361 9.75e-65 194
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Apr10g2132 LOB 1.4e-37 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr10g2132 - - gmx:100791250 325.094
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr10g2132 10 33955364 33956214 Apr10g2132 10 33955364 33956214 ECH