Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr10g2129 ATGTCAACCCCAGATTCTCGATCACTGAATTGGCACTACACAGAGCTCGATGACAGAGACCTTGAGATCCGAGGAAGGACCCTTTTCTTCATCATCGTACTCTTCTCCATTATCCTTCTCGTCACTGTTCTCTTCCTGTACACTCGCTGGGTTTGCCGCTACCAGGGGCACCTCCCCACCACCGTGTTCACCGGCGTCGTCCACCCGCCGCCGCCTCCTCCGCCGCAGGGACTCGACCCTGCTTCGATTAAGAAATTGCCCATTATCCTCCACCAGGCGCCGTCGGATAACGGCGGCGCGTGGGAGGAAACGGAATGTTGTATTTGCCTCGGCGAGTTCAGAGACGGTGAGAAGGTGAAGGTTTTGCCAGGGTGTGACCACTTTTTCCATTGTGATTGTGTTGATAAGTGGCTCACTCATCACTCTAGCTGCCCACTCTGCAGAGCTTCTCTAAAGGTTGAATCTTCATTCCCAAAGATTTTGATTCAGGAACCACCCATTAGAATTGACATCCAGTTCTAG 522 0.5249 MSTPDSRSLNWHYTELDDRDLEIRGRTLFFIIVLFSIILLVTVLFLYTRWVCRYQGHLPTTVFTGVVHPPPPPPPQGLDPASIKKLPIILHQAPSDNGGAWEETECCICLGEFRDGEKVKVLPGCDHFFHCDCVDKWLTHHSSCPLCRASLKVESSFPKILIQEPPIRIDIQF* 174
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr10g2129 173 Pfam Ring finger domain 105 148 IPR001841 -
Apr10g2129 173 ProSiteProfiles Zinc finger RING-type profile. 106 148 IPR001841 -
Apr10g2129 173 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 73 154 IPR013083 -
Apr10g2129 173 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 2 163 IPR044675 -
Apr10g2129 173 SUPERFAMILY RING/U-box 100 154 - -
Apr10g2129 173 PANTHER RING-H2 FINGER PROTEIN ATL66 2 163 - -
Apr10g2129 173 SMART ring_2 106 147 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr10g2129 Apr-Chr10 33935412 33937067 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr10g2129 9 156 C3H Transcription Factor Family AT3G11110 43.791 2.33e-35 119
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr10g2129 - - gmx:100803278 287.73
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr10g2129 10 33935412 33937067 Apr9g1440 9 24045267 24045797 PCT