Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr10g2128 ATGGGAGATAAAAAGCTCAGAAATCATGGAAGAAACTTTAGAATGGTTTCCATTGTGACTATGGAAAATTACTATGATTCTGGTTGGCATCCGGGCACAACCTGGGCTCAATGCAGCGATCATTCTCCTTTTGCAGTGCCTACACAAATACTGCCTCATGTATCTGACCCTGCCTCTCTTCAATTTGGTGAGTTTCACTCATGGCCAGTACCCATTGAAGGGAGTGCCCAAGAGAGACCAACAAGTGCTTCCAAGAGTCACAGTCAAGCAGAAAAAAGGCGGAGAGATAGGATCAATGCACAGCTTGCAACTCTCAGAAAACTAATTCCCAAGTCTGATAAGATGGACAAGGCAGCTTTACTAGGGAGTGTGATAGAGCAGGTCAAAGATCTAAAGCGAAAGGCAATGGATATTAGCAGAGCCTCCACAGTTCCAAGTGAGATTGATGAAGTATTAATTGACTATGACCATGTTCAAGATGAAAGCTGCACTAAAGTTAACAAATTGAACGACAACATTTGCATCAAAGCTTCTGTTTGCTGCGATGATAGACCAGAACTGTTCCCTGAACTCATTCAAGTCCTCAAAGGGTTGAGACTCACAGCAGTTAAAGCTGACATAGCAAGTGTAGGTGGCAGGATTAAAAGCATATTGGTGCTTTGTTCTAAGGACAGTGGAGAGAGCGTTTGCCTTAGCACTCTCAAACAGTCCCTTAAATCAGCTGTGACCAAAATTGCTTCATCATCCATGGCATCTAATTGCCCCACTAGAAGTAAGAGGCAAAGGTTTTTCTTGCCTTCTCATTGCCTATAG 813 0.4317 MGDKKLRNHGRNFRMVSIVTMENYYDSGWHPGTTWAQCSDHSPFAVPTQILPHVSDPASLQFGEFHSWPVPIEGSAQERPTSASKSHSQAEKRRRDRINAQLATLRKLIPKSDKMDKAALLGSVIEQVKDLKRKAMDISRASTVPSEIDEVLIDYDHVQDESCTKVNKLNDNICIKASVCCDDRPELFPELIQVLKGLRLTAVKADIASVGGRIKSILVLCSKDSGESVCLSTLKQSLKSAVTKIASSSMASNCPTRSKRQRFFLPSHCL* 271
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr10g2128 270 Gene3D - 76 139 IPR036638 GO:0046983
Apr10g2128 270 Pfam Helix-loop-helix DNA-binding domain 85 131 IPR011598 GO:0046983
Apr10g2128 270 MobiDBLite consensus disorder prediction 71 96 - -
Apr10g2128 270 CDD ACT_UUR-ACR-like 178 213 - -
Apr10g2128 270 CDD bHLH_AtAIG1_like 77 156 - -
Apr10g2128 270 PANTHER TRANSCRIPTION FACTOR BHLH30 50 268 IPR045847 GO:0003700|GO:0006355
Apr10g2128 270 PANTHER TRANSCRIPTION FACTOR BHLH51 50 268 - -
Apr10g2128 270 SMART finulus 88 137 IPR011598 GO:0046983
Apr10g2128 270 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 82 131 IPR011598 GO:0046983
Apr10g2128 270 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 80 134 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr10g2128 Apr-Chr10 33927233 33929215 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr10g2128 21 268 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G40200 42.045 1.31e-50 165
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Apr10g2128 HLH 2.3e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr10g2128 - - gmx:100799687 477.633
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr10g2128 10 33927233 33929215 Apr10g2128 10 33927233 33929215 ECH
Apr10g2128 10 33927233 33929215 Apr9g1438 9 24030513 24032029 PCT