Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr10g2118 ATGACCAATGATGCAAGCGTCCATGATTTTGTTTGGGAAAATGATAACGATTTTGAGAGTATAACTTCAAGCATGATGAGTTCAGAAATATCCATTAGACATGTTCCTAGTTATTCTTGGCAACTGGACAATGCAATAAGAAGCATTCCTGTGGATAGTCATACACATGTCCATGGTTTTGCTTCGATAGTGGACAATCACATAAGGAGTACAGAAGGTTTGGGAACATCAACTGTGCATGGTTTTGCTTGGCGAGTGGATAATGATATCAAGAGCAATACAATTGCTAGGGTATCACCAAAAGTGAAAGCAAGTGTGCGAAAACGCCATGCTCGTGATGTTGACACTTTTAAACTGTTCACCCTGGCTGAGCTTGAAGATGCCACCAACAACTTCTCGCTTGAGAACAAGGTTGATGGTGATGTGTACAGAGGAAAACTCGTTGATGGTCGTGAGGTGGCCATAAAGATGAAAAGTTTTCACCAGAAAGAGGATGCATTGGTGTCTGAATTGACATCCTTGTCCCGTGTGCATCATAAACACTTGGTTAAGCTTGTTGGGTTCTATAAAGAGAAAGACAAAGGGCTCTTGGTGTATGATTACATGAAGAATGGGTCACTGCAGGATCATTTACATGACAAGAACAACGTGGAGAAGAGTAGCAGTGTGTTGAATTCATCATGGAGAATAAGGATCAAAGTTGCATTGGATGCTGCCCGAGGAATGGTACATCTGCATGGTTCTGCATATCCATCTAATATTCATGGATATATAAAGTCCTCCAACATCCTTTTTGATGGGACTGGGACAGCAAGAGTATCTGATTATGGATTAACAATGAAATCAGGATACACTGATCATGAGTACATTGATCAAAATGAGTTGAAAAAACCGAGAGATGATGAATATGGGTTTGGAGTTGTACTGCTACAGCTTCTAACAGGAAAGAGAGCTATGTTCAAGCATGGTGAAGATGGAGGCACCCCATTAAGTGTTGTAGACTTTGCTGTGCCTGCTATTTTGAATGGAGATTTATTGAAAATTTTGGATCCAAGGGTTGGACCCCCGAATGCAAATGAAAAAGAAGCAGTGGTGTTAGTGGCCAACACCGCAATCAGTTGTGTGGATTTGGAAGGTAAATATCAACAAGACAACCGAAAGATGGTTCATATTATGACCAACTTGGAGCGTGCATTTCTCATATGTGATAGCAGCGATGACATAATCTCAATTGGTACAACTCATGACGCAGCAGATCACTCAAACTGGGAAGAGGAGTTTCCTGATCTGGATGAGCCTGTAGCAGCCACCAACAATTTCTTACTTGAAAATTAA 1335 0.4105 MTNDASVHDFVWENDNDFESITSSMMSSEISIRHVPSYSWQLDNAIRSIPVDSHTHVHGFASIVDNHIRSTEGLGTSTVHGFAWRVDNDIKSNTIARVSPKVKASVRKRHARDVDTFKLFTLAELEDATNNFSLENKVDGDVYRGKLVDGREVAIKMKSFHQKEDALVSELTSLSRVHHKHLVKLVGFYKEKDKGLLVYDYMKNGSLQDHLHDKNNVEKSSSVLNSSWRIRIKVALDAARGMVHLHGSAYPSNIHGYIKSSNILFDGTGTARVSDYGLTMKSGYTDHEYIDQNELKKPRDDEYGFGVVLLQLLTGKRAMFKHGEDGGTPLSVVDFAVPAILNGDLLKILDPRVGPPNANEKEAVVLVANTAISCVDLEGKYQQDNRKMVHIMTNLERAFLICDSSDDIISIGTTHDAADHSNWEEEFPDLDEPVAATNNFLLEN* 445
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr10g2118 444 Gene3D Transferase(Phosphotransferase) domain 1 202 400 - -
Apr10g2118 444 PANTHER SERINE/THREONINE-KINASE CCR4-LIKE PROTEIN 51 406 - -
Apr10g2118 444 Pfam Protein tyrosine and serine/threonine kinase 140 297 IPR001245 GO:0004672|GO:0006468
Apr10g2118 444 PANTHER SERINE/THREONINE-PROTEIN KINASE-LIKE PROTEIN CCR4 51 406 IPR044815 GO:0004674
Apr10g2118 444 SUPERFAMILY Protein kinase-like (PK-like) 116 361 IPR011009 -
Apr10g2118 444 Gene3D Phosphorylase Kinase; domain 1 102 201 - -
Apr10g2118 444 ProSiteProfiles Protein kinase domain profile. 128 400 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr10g2118 Apr-Chr10 33844390 33845724 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr10g2118 109 419 Receptor kinase-like Gene Family AT3G55950 50.432 6.77e-86 278
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_CR4L Apr10g2118 PK_Tyr_Ser-Thr 2e-22 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr10g2118 - - aprc:113851286 885.945
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr9g1424 9 23859183 23861972 Apr10g2118 10 33844390 33845724 ECH
Apr10g2118 10 33844390 33845724 Apr10g2118 10 33844390 33845724 ECH