Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr10g2116 ATGACATCACTGAATCACCGCCCTCCACCGCCATCGCCGCTCTCCGACTCCGACTCTGACGGCGGTTCCTCCACCGCCGAGACCCTCCGCCACTCTGACCTCTCCGATTCCATATTCAAATCATACTTCGATTTCTCCGGTCACTCCTCCGCCACCGCCGGCGACCTCTCCAAGATCCAATCATTCCTCACCTCTTCCTCCGCCGGCGCACTCTCATGCCTCATATGCCTTGAACGCATCAAGCCCTCCGACCCCACCTGGTCATGCTCCTCTCTCTGCTTCGCCGTCTTCCACCTAATCTGCATCCAGAGCTGGGCTCGCCAAGCCTCCGATCTCGCCGCCGCACGTGCCGCCACGCGCCTCCCCATCTCCCCCGACAAGGCATCCGACACCGCCATCTGGAACTGCCCGAAATGCAGGGTCGAATACCCCAAAACCCACATTCCAAAAGCGTACCTTTGCTTCTGTGGGAAGTTGGAGAACCCTCCCAGTGATGATCCATGGGTTTTACCTCATTCTTGTGGTGACGTTTGTGGAAGACCATTGAAGCACAATTGTGGGCACCGTTGTTTGTTGCTTTGCCATCCTGGGCCATGTCCGTCTTGCCCCAAACTTGTTAAAGTTCGATGCTTTTGTGGATCCCTTGAAGATGTTAGACGCTGTGGCTTCAAGGATTTTTCTTGTAATAGTCCTTGTTCCAAGGTGCTGGATTGTGGTGTTCATAGGTGTGTTGAGGTTTGCCACCGTGGCCCTTGCCCTCCTTGTAGAACACGTGGCGTGCATGCGTGCCAGTGTGGGAAGATCAAAGAGGAAAAGGAGTGTTGTGATCGTGTTTTTCAATGTGGTTACCCTTGTGAGAAGAGACTTAGCTGTGGGAAGCATGTTTGTGAGAGAGGGTGCCATTCTGGTGAGTGTGGTGAGTGTCCCCTGCAGGGGAAGAGAACGTGTCCTTGTGGCTCAAGGGTGTATGAAGGAATGTCTTGTGATGCTCCTGTGCAGCTCTGTGGAGCTACTTGTAATAAGATGTTACCTTGTGGCTATCATAGGTGCCATGAGCGGTGCCACCGTGGGCAATGCATTGAGACTTGTAGGATTGTGGTGAAGAAGTCCTGTCGTTGTGGGAGTCTCAAGAAAGATGTTCCTTGCTATCAAGATTTGGCGTGTGAAAGGAAGTGTAAAAGGATGCGTGACTGCGGTCGTCATGAGTGTAAACGCCGCTGCTGTGATGGCGATTGCCCTCCTTGCTCAGAGATATGTGGCAGGAGGCTTCGGTGTAAGAATCATAAATGCCCTTCACCATGCCATAGAGGTCCCTGTGCTCCTTGCCCAATAATGGTCACAATTTCGTGTGCATGTGGAGAGACACATTTTGAGGTTCCTTGTGGTACTGAAATGGATCAAAAGCCACCTAGATGTCCTAAACTATGTCCTATCACTCCTTTATGCCGGCATGCATCAAACTGCAAGCCACATAAATGCCACTATGGAGCCTGCCCTCCTTGTCGGCTACCTTGTGCAGAAGAGTACCAATGTGGCCATACATGCAAATTAAGGTGTCATGGTGCTAAGCCTCCTCCTAATCCAGAGTATACTCTCAAACCAAAGAAAAAAAAGATTTTACAACAAAGGGAAACTGTTCCTGGCACTCCATGCCCTCCTTGCCCAGAACTTGTGTGGAGATCATGTGTTGGACAACACATTGGAACAGAGAAAATGATGGTCTGCTCTCATAAATCACGGTTTTCCTGTGAAAACTTGTGTGGTAATCCTCTACCATGTGGTAATCATTATTGTACAAAAACCTGCCATGCGTTGGTGAACCAGTTACAAGGAAGTGAGCCTTGTGAAGATTGTTATCTTCCTTGCCAAAAGGAACGAGAACCTACATGTCCACATCCGTGCCCTCAGCCCTGCCATCCTGGAGACTGTCCCCCGTGCAAGGTGCTCATTAAACGGTCATGCCACTGTAGTGCGATGGTCCATGTTTTTGAATGCATATATTACAACACCTTGTCTGTGAAGAGTCAAGAGACCGTTCGTTCATGTAGTGGGCCATGTCATAGAAAGTTGCCAAATTGTACACATCTATGCCCTGAGACATGTCATCCTGGTCAATGCCCAAAACCTGAGAAATGCAGTAAGAAGGTCACTGTTCGATGCAAATGTCAAACATTGAAAAAGGAGTGGCTTTGTCAAGATGTTCAAGCAGCATATCATGATGCTGGTTGCCATCCAAGGGATATACCAAAAAGTCAATTTGGAGTTGGCCTTATTCCTTGTAATTCTGATTGTAAGAGTAGAGTCCAGGTGGTTGAGTCAGAAATACAATTTCGTAAATCTAGAGTTACAGAGGTAAAAGAGGCAGATAAAGAAAAATCAGTTTCAAAGCGACGAAAAAGGCGGGAACGGGTTCTAGAATCCAAGGAAACAACAAAACTACAGAAAATTATTTCCAGAACGAAGCAGCTTCTTCTATTTACCTTAATTTTGGTCATAGTTGTTGTTGCTACATATTATGGATACAAGGGACTTTTACGGCTCTCTGATTGGATGAATGAAGTTGATGAACGAAGACAAAGATATTCTCGAATCAAATGA 2598 0.48 MTSLNHRPPPPSPLSDSDSDGGSSTAETLRHSDLSDSIFKSYFDFSGHSSATAGDLSKIQSFLTSSSAGALSCLICLERIKPSDPTWSCSSLCFAVFHLICIQSWARQASDLAAARAATRLPISPDKASDTAIWNCPKCRVEYPKTHIPKAYLCFCGKLENPPSDDPWVLPHSCGDVCGRPLKHNCGHRCLLLCHPGPCPSCPKLVKVRCFCGSLEDVRRCGFKDFSCNSPCSKVLDCGVHRCVEVCHRGPCPPCRTRGVHACQCGKIKEEKECCDRVFQCGYPCEKRLSCGKHVCERGCHSGECGECPLQGKRTCPCGSRVYEGMSCDAPVQLCGATCNKMLPCGYHRCHERCHRGQCIETCRIVVKKSCRCGSLKKDVPCYQDLACERKCKRMRDCGRHECKRRCCDGDCPPCSEICGRRLRCKNHKCPSPCHRGPCAPCPIMVTISCACGETHFEVPCGTEMDQKPPRCPKLCPITPLCRHASNCKPHKCHYGACPPCRLPCAEEYQCGHTCKLRCHGAKPPPNPEYTLKPKKKKILQQRETVPGTPCPPCPELVWRSCVGQHIGTEKMMVCSHKSRFSCENLCGNPLPCGNHYCTKTCHALVNQLQGSEPCEDCYLPCQKEREPTCPHPCPQPCHPGDCPPCKVLIKRSCHCSAMVHVFECIYYNTLSVKSQETVRSCSGPCHRKLPNCTHLCPETCHPGQCPKPEKCSKKVTVRCKCQTLKKEWLCQDVQAAYHDAGCHPRDIPKSQFGVGLIPCNSDCKSRVQVVESEIQFRKSRVTEVKEADKEKSVSKRRKRRERVLESKETTKLQKIISRTKQLLLFTLILVIVVVATYYGYKGLLRLSDWMNEVDERRQRYSRIK* 866
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr10g2116 865 CDD NF-X1-zinc-finger 281 328 - -
Apr10g2116 865 MobiDBLite consensus disorder prediction 1 15 - -
Apr10g2116 865 CDD NF-X1-zinc-finger 388 436 - -
Apr10g2116 865 CDD NF-X1-zinc-finger 415 463 - -
Apr10g2116 865 Pfam NF-X1 type zinc finger 632 647 IPR000967 GO:0005634|GO:0008270
Apr10g2116 865 Pfam NF-X1 type zinc finger 593 603 IPR000967 GO:0005634|GO:0008270
Apr10g2116 865 Pfam NF-X1 type zinc finger 291 309 IPR000967 GO:0005634|GO:0008270
Apr10g2116 865 Pfam NF-X1 type zinc finger 419 443 IPR000967 GO:0005634|GO:0008270
Apr10g2116 865 Pfam NF-X1 type zinc finger 238 256 IPR000967 GO:0005634|GO:0008270
Apr10g2116 865 Pfam NF-X1 type zinc finger 511 520 IPR000967 GO:0005634|GO:0008270
Apr10g2116 865 Pfam NF-X1 type zinc finger 398 416 IPR000967 GO:0005634|GO:0008270
Apr10g2116 865 Pfam NF-X1 type zinc finger 345 363 IPR000967 GO:0005634|GO:0008270
Apr10g2116 865 Pfam NF-X1 type zinc finger 694 712 IPR000967 GO:0005634|GO:0008270
Apr10g2116 865 Pfam NF-X1 type zinc finger 186 203 IPR000967 GO:0005634|GO:0008270
Apr10g2116 865 Pfam NF-X1 type zinc finger 492 502 IPR000967 GO:0005634|GO:0008270
Apr10g2116 865 MobiDBLite consensus disorder prediction 1 28 - -
Apr10g2116 865 CDD NF-X1-zinc-finger 228 276 - -
Apr10g2116 865 PANTHER NUCLEAR TRANSCRIPTION FACTOR, X-BOX BINDING 1 NFX1 15 862 IPR034078 GO:0003700
Apr10g2116 865 CDD NF-X1-zinc-finger 335 384 - -
Apr10g2116 865 SMART znfxneu3 238 257 IPR000967 GO:0005634|GO:0008270
Apr10g2116 865 SMART znfxneu3 511 556 IPR000967 GO:0005634|GO:0008270
Apr10g2116 865 SMART znfxneu3 593 620 IPR000967 GO:0005634|GO:0008270
Apr10g2116 865 SMART znfxneu3 425 444 IPR000967 GO:0005634|GO:0008270
Apr10g2116 865 SMART znfxneu3 345 365 IPR000967 GO:0005634|GO:0008270
Apr10g2116 865 SMART znfxneu3 186 204 IPR000967 GO:0005634|GO:0008270
Apr10g2116 865 SMART znfxneu3 398 417 IPR000967 GO:0005634|GO:0008270
Apr10g2116 865 SMART znfxneu3 488 503 IPR000967 GO:0005634|GO:0008270
Apr10g2116 865 SMART znfxneu3 630 648 IPR000967 GO:0005634|GO:0008270
Apr10g2116 865 SMART znfxneu3 291 310 IPR000967 GO:0005634|GO:0008270
Apr10g2116 865 SMART znfxneu3 693 714 IPR000967 GO:0005634|GO:0008270
Apr10g2116 865 PANTHER NF-X1-TYPE ZINC FINGER PROTEIN NFXL1 15 862 - -
Apr10g2116 865 CDD NF-X1-zinc-finger 174 222 - -
Apr10g2116 865 SUPERFAMILY RING/U-box 68 145 - -
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-X1 Apr10g2116 zf-NF-X1 0.0024 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr10g2116 K15683 - gmx:100799540 1611.28
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr10g2116 10 33824798 33830974 Apr10g2116 10 33824798 33830974 ECH