Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr10g2112 ATGGCTTCCAGAGCCACTGGAACGTTGATTCTGGCGTGTCTCGTATGGCTTTTCTGCCTCTGCGCCATCATTGCATTCTTTCAGCTTAACTTGGTGGACAACGGAACAGTTGACAACAACCTCGTCACAACTCAGCATCACCTCTCAGATACCCCTTTGGAAGAGAATTTGGAGGGTGTCACAAACAAGGTGTTTTTTGATGTTCAGATCGATGGAAAATCAGCGGGTCGCATAGTCATGGGACTTTTTGGGACTACAGTACCGAAAACTAAAACTTTCGAGCGCTTTGTACGGCATCACATTTCAGGAGAGAAAGGGGTAGGAAGAAGTGGGAAGCGTCTTCATTATAAAGGGAGCACATTCCATAGGATTATACCGAGCTTTATGGTCCAAGGGGGTGATTTCACCCGTGGTGATGGAAGAGGTGGAGAATCAATCTATGGTGATAAGTTTGCTGATGAAAACTTCAAGCTGAAGCATACTGGGCCAGGATACTTATCCATGGCAAATTCTGGCGAAGACACCAATGGTTCCCAGTTTTTCATAACAACAGTTAAAACTAGCTGGCTGGATGGACGCCATGTTGTATTTGGCAAGGTACTCTCCGGCATGGATGTTTTGTACAAGATTGAAGCAGAAGGAAGTGAAACTGGCTCGCCCAAAAGCACGGTTGTCATATTAAACAGTGGAGAATTAACTTCTTAA 705 0.4511 MASRATGTLILACLVWLFCLCAIIAFFQLNLVDNGTVDNNLVTTQHHLSDTPLEENLEGVTNKVFFDVQIDGKSAGRIVMGLFGTTVPKTKTFERFVRHHISGEKGVGRSGKRLHYKGSTFHRIIPSFMVQGGDFTRGDGRGGESIYGDKFADENFKLKHTGPGYLSMANSGEDTNGSQFFITTVKTSWLDGRHVVFGKVLSGMDVLYKIEAEGSETGSPKSTVVILNSGELTS* 235
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr10g2112 234 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 82 97 IPR002130 GO:0000413|GO:0003755
Apr10g2112 234 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 121 133 IPR002130 GO:0000413|GO:0003755
Apr10g2112 234 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 164 179 IPR002130 GO:0000413|GO:0003755
Apr10g2112 234 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 179 191 IPR002130 GO:0000413|GO:0003755
Apr10g2112 234 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 192 207 IPR002130 GO:0000413|GO:0003755
Apr10g2112 234 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 65 231 IPR002130 GO:0000413|GO:0003755
Apr10g2112 234 SUPERFAMILY Cyclophilin-like 60 232 IPR029000 -
Apr10g2112 234 ProSitePatterns Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature. 116 133 IPR020892 GO:0003755|GO:0006457
Apr10g2112 234 Gene3D - 53 234 IPR029000 -
Apr10g2112 234 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE CYP21-2 40 232 - -
Apr10g2112 234 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 40 232 - -
Apr10g2112 234 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 68 228 IPR002130 GO:0000413|GO:0003755
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr10g2112 Apr-Chr10 33796889 33800000 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr10g2112 112 211 U-box Gene Family AT5G67530 52.475 5.47e-24 98.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr10g2112 K01802 - gmx:100798499 379.022
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr10g2112 10 33796889 33800000 Apr10g2112 10 33796889 33800000 ECH