Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr10g2094 ATGGATGTGATAAAGACTCAGCAAATCTCATCGCGACCAATCGAGAAGGTGGTAGTTCACCCTCTTGTGTTGCTCAGCATCGTCGACAACTACAACAGAGTTGCTAAGGACACTCGCAAGCGCGTCGTTGGCGTCTTGCTCGGTTCCTCTTTCAAAGGCACCGTCGACGTTACCAACAGCTACGCCGTGCCCTTTGAAGAAGATGACAAGGATCCTAGCATCTGGTTTCTTGACCACAATTACCATGAATCCATGTTTTCCATGTTTAAAAGAATAAATGCAAAGGAGCATGTTGTGGGGTGGTATAGCACTGGTCCAAAACTGCGTGAAAATGATCTTGACATTCATGGCCTATTTAATGACTATGTTCCAAATCCTGTTTTGGTTATTATAGATGTTGAACCTAAGGAGTTGGGAATCCCAACAAAAGCATACTACGCTGTTGAAGAGAATGCCACTCAGAAAAGCCAAAAGGTCTTTGTACATGTGCCATCAGAGATTGCTGCTCATGAAGTTGAGGAAATCGGAGTGGAACACTTGCTTAGAGATGTGAAGGATACTACCATTAGCACCCTTGCAACAGAGGTGAGTGCAAAACTCACAGCCTTGAAGGGTTTAGATGCAAGACTTAAAGAGATAAGGAGTTACCTTGACCTTGTTATTGATGGAAAACTTCCATTAAACCATGAGATCCTGTACCATCTTCAGGATGTGTTTAACCTGCTACCAAATCTTAATGTTGCCGATCTCATCAAAGCTTTCGCAGTGAAAACCAATGATATGATGTTGGTAATATACCTGTCGTCTCTCATTAGAAGTGTAATTGCACTCCACAATTTGATTAACAACAAGATGCTCAACAAAGAACATGAAAGGGCAGAAGATTCAAAATCAGTACCAGTGCCAAGTGCAGCTGCATAA 921 0.4245 MDVIKTQQISSRPIEKVVVHPLVLLSIVDNYNRVAKDTRKRVVGVLLGSSFKGTVDVTNSYAVPFEEDDKDPSIWFLDHNYHESMFSMFKRINAKEHVVGWYSTGPKLRENDLDIHGLFNDYVPNPVLVIIDVEPKELGIPTKAYYAVEENATQKSQKVFVHVPSEIAAHEVEEIGVEHLLRDVKDTTISTLATEVSAKLTALKGLDARLKEIRSYLDLVIDGKLPLNHEILYHLQDVFNLLPNLNVADLIKAFAVKTNDMMLVIYLSSLIRSVIALHNLINNKMLNKEHERAEDSKSVPVPSAAA* 307
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr10g2094 306 Pfam JAB1/Mov34/MPN/PAD-1 ubiquitin protease 15 124 IPR000555 GO:0005515|GO:0008233|GO:0008237
Apr10g2094 306 Gene3D Cytidine Deaminase, domain 2 9 191 - -
Apr10g2094 306 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT F-RELATED 1 305 - -
Apr10g2094 306 CDD MPN_RPN7_8 15 292 IPR033858 GO:0005838
Apr10g2094 306 Pfam Maintenance of mitochondrial structure and function 171 282 IPR024969 -
Apr10g2094 306 SMART pad1_6 16 150 IPR000555 GO:0005515|GO:0008233|GO:0008237
Apr10g2094 306 ProSiteProfiles MPN domain profile. 17 151 IPR037518 -
Apr10g2094 306 PANTHER 26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 7 1 305 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr10g2094 Apr-Chr10 33657503 33660914 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr10g2094 19 245 Eukaryotic Initiation Factors Gene Family AT2G39990 29.437 1.28e-26 104
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr10g2094 K03038 - gmx:100790393 593.193