Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr10g2088 ATGGAATTCGAGACTATATACCCATCTTGTTTTATGTCAAATTCAAATTGGTTTGTTCAAGAGAGTCACAGCACAGAATGGACTAGAGAAGAGAATAAGAAGTTTGAAAGTGCCCTTGCCATATATGATAAGGATACCCCAGATAGATGGGTGAGGGTAGCTGCCATGCTCCCTGGGAAAACTGTCTTTGATGTGATCAAGCAATATAGGGAATTGGAAGAAGATGTTAGTGAAATAGAAGCAGGGAGGGTTCCTGTTCCTGGATATCCTACTTCTTCTTTCACTTTGGAGCTGGTTTACAATCAGAGTTATGATGGATGCAGAAAAAGGCCTAATACTGTAAGAAGTTCTGATCAAGAGAGGAAGAAAGGAGTCCCTTGGACAGAAGAGGAACACAGGCGTTTTCTGATGGGGCTTCTAAAGTATGGTAAAGGTGACTGGAGAAATATCTCTCGAAATTTTGTGTTCACAAAGACTCCAACCCAAGTGGCAAGCCATGCTCAAAAGTATTACATAAGGCAAAAGCTTTCTGGAGGGAAAGACAATAAAAGGAGACCTAGTATACATGATATCACCATTGTTAATCTTACAGAAACTAGTCAAACTACCACATCAGATCAAGAGAAGCCTCTTTTATTCATTGAGTCTCACAAGCCTTCCCAGCAGCAGAAGCTGACTAGCATGCCAAAAGTACAACTGGAATGGATTAATCACCACAATGATGGGTCACTGATGGTTTTCAACCCAAATTATGATATGTTCATGTCATCGTCATCTGGCATCTCTACCAAGACCCTCAAGTTTCAAGGGCAGGATATCTATGAATGTGCTTTTCATGAGACTTACGCCAAGCTAAAATCTCCTGGTTTCAGGACAGCTTCAAGTGAGTTCAATACGGAGGCTATTTTTGGCATTCATGCACTGTAA 927 0.4099 MEFETIYPSCFMSNSNWFVQESHSTEWTREENKKFESALAIYDKDTPDRWVRVAAMLPGKTVFDVIKQYRELEEDVSEIEAGRVPVPGYPTSSFTLELVYNQSYDGCRKRPNTVRSSDQERKKGVPWTEEEHRRFLMGLLKYGKGDWRNISRNFVFTKTPTQVASHAQKYYIRQKLSGGKDNKRRPSIHDITIVNLTETSQTTTSDQEKPLLFIESHKPSQQQKLTSMPKVQLEWINHHNDGSLMVFNPNYDMFMSSSSGISTKTLKFQGQDIYECAFHETYAKLKSPGFRTASSEFNTEAIFGIHAL* 309
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr10g2088 308 SUPERFAMILY Homeodomain-like 25 79 IPR009057 -
Apr10g2088 308 ProSiteProfiles SANT domain profile. 127 175 IPR017884 -
Apr10g2088 308 CDD SANT 126 170 IPR001005 -
Apr10g2088 308 SMART sant 23 75 IPR001005 -
Apr10g2088 308 SMART sant 123 173 IPR001005 -
Apr10g2088 308 SUPERFAMILY Homeodomain-like 121 175 IPR009057 -
Apr10g2088 308 ProSiteProfiles SANT domain profile. 22 77 IPR017884 -
Apr10g2088 308 Gene3D - 125 176 - -
Apr10g2088 308 ProSiteProfiles Myb-like domain profile. 119 171 IPR001005 -
Apr10g2088 308 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 122 174 IPR006447 GO:0003677
Apr10g2088 308 PANTHER DUPLICATED HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 3 289 IPR043363 -
Apr10g2088 308 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 119 175 IPR017930 -
Apr10g2088 308 CDD SANT 26 72 IPR001005 -
Apr10g2088 308 Pfam Myb-like DNA-binding domain 126 170 IPR001005 -
Apr10g2088 308 Gene3D - 19 86 - -
Apr10g2088 308 PANTHER DUPLICATED HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN 3 289 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr10g2088 Apr-Chr10 33612121 33614265 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Apr10g2088 Myb_DNA-binding 1.3e-10 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr10g2088 - - gmx:100783469 514.227
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr9g1401 9 23607577 23609728 Apr10g2088 10 33612121 33614265 ECH
Apr10g0708 10 17512361 17515035 Apr10g2088 10 33612121 33614265 ECH
Apr10g2088 10 33612121 33614265 Apr10g2088 10 33612121 33614265 ECH
Apr10g2088 10 33612121 33614265 Apr9g1401 9 23607577 23609728 PCT