Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr10g2077 ATGTCGCTTGTTGCAGAGGACAAGTCTGAAGTTGATGTCGTGGTTGACATTGACAATGGTTGTTCTGACGAGCAGCAAAGGTGTTCCGAGATTGTGAGAGTGGTAGCTGATGTGAAGGTGCATTTGGCTAAGGTGGAAAGGGATTGCAGGATTTGCCATCTCAGCATGGATATGACCAACCATAACCATGAATCTGCCGCTCCCATTGAGCTTGGATGTTCTTGCAAAGATGATTTGGCTGCTGCCCACAAACAATGTGCTGAGGCTTGGTTCAAGATCAAGGGTAACAAAACTTGTGAAATATGTGGATCCATTGCACACAATGTAGCTGGTGTAATTGAAGCTGAAATGACAGAAGAATGGACTGGAGCAAATGATGGATCCACCATACCACCAAATGGACCTGCCCCTGCTGCAGAAACTCGAAATTTCTGGCAGGGTCATCGCTTCTTGAATTTTCTTCTTGCATGTATGGTATTTGCTTTTGTCATATCCTGGCTTTTTCACTTCAATGTGCCCTCATGA 525 0.4495 MSLVAEDKSEVDVVVDIDNGCSDEQQRCSEIVRVVADVKVHLAKVERDCRICHLSMDMTNHNHESAAPIELGCSCKDDLAAAHKQCAEAWFKIKGNKTCEICGSIAHNVAGVIEAEMTEEWTGANDGSTIPPNGPAPAAETRNFWQGHRFLNFLLACMVFAFVISWLFHFNVPS* 175
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr10g2077 174 ProSiteProfiles Zinc finger RING-CH-type profile. 41 109 IPR011016 GO:0008270
Apr10g2077 174 CDD RING_CH-C4HC3_MARCH 49 103 - -
Apr10g2077 174 Pfam RING-variant domain 49 102 IPR011016 GO:0008270
Apr10g2077 174 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 36 111 IPR013083 -
Apr10g2077 174 SUPERFAMILY RING/U-box 46 105 - -
Apr10g2077 174 SMART ringv_2 48 103 IPR011016 GO:0008270
Apr10g2077 174 PANTHER RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN 10 174 - -
Apr10g2077 174 PANTHER ZINC FINGER, RING-CH-TYPE 10 174 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr10g2077 Apr-Chr10 33538392 33540294 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr10g2077 40 174 C3H Transcription Factor Family AT5G05830 68.613 1.67e-62 190
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr10g2077 - - aprc:113851280 367.851
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr9g1388 9 23517865 23519864 Apr10g2077 10 33538392 33540294 ECH
Apr4g1967 4 28092535 28095457 Apr10g2077 10 33538392 33540294 ECH
Apr10g0672 10 16574928 16577420 Apr10g2077 10 33538392 33540294 ECH
Apr10g2077 10 33538392 33540294 Apr10g2077 10 33538392 33540294 ECH