Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr10g2063 ATGGCTCCTCCCTCACATATCAATCATCTTTCTCACCCTTGTATATACGGGGACTTTGTTTCTTCATACTCAGAGAGAAAGTCTGGTTTTATGAAATGGTTTGGGAAGATTTTCAAACTTGGGTCCAGTAGTAGAGGAAGGGGTGGTGGCCGTCATATACAGCAGCCTGTGGAGGAAAACATGGTTTGGCCAGCTTCAGCTAGATCATTGGATGACCGAGCTAGATTTCGGAAGGAGGAAGAGGATTTGGACCATGCAATTGCACTTTCTTTGAGCGATGATTTAAAGAGACCAATAAGATATAGATGGAGAACAGGAACTGATGAAGATTATGCAAAGGCTCTTCAGGATCGCATGTTCTCATCTGCACATCCTCCATATACCCCTTTACCTTTTTATCCACGGGGATATGGTGTGGCATCTCATATCAAAATATGTGGAGGGTGCAACCAAGAAATACTTCATGGAAATTGTTTAGGAATTGGGCATAGTTATTTTCATCCAGACTGTTTTAGGTGTCACATTTGTCATTACCCAATTACTGAGCATGAGTTTTCTTTGTCAGGGAAGCATCCATATCACAAGTCTTGTTTTAAAGAATTGACCCACCCTAAATGTGAAGTTTGCCATCAATATATACCTATAAATGCTGCTGGTTTGATTGAGTATAGATGCCACCCCTATTGGAACCAAAAGTACTGTCCATCTCATGAATATGATAATACAGTTCGCTGCTGTAGTTGTGAAAGATTAGAGTCCCGGGATGAAAGATACTTGAGATTGGAAGATGGAAGGATTTTGTGCTTTGAGTGCATGGAATCTGCTATAACAGACACTGGTGAATGCCAACCTCTTTATCATGCTATCAGAGATTATTATGAAGGAATGAATATGAGAATAGACCAACAAGTTCCCATGCTTCTTGTTGGCAGAGAAGCACTCAATGAAGCTATTGTTGGGGAGAAGAATGGTTTCCATCACATGCCAGAAACAAGAGGCTTATGCCTTTCAGAAGAGCAAACTGTCACAAGTGTATATAGATGGCCAAGAATTGGAGGCCATCGATTAAATGGGATGAGAAGTCAACCTCACAAGCTGAATAGAAAATGCGAAGTGACAGCTATTCTTGTTCTCTATGGTCTTCCGAGGTTACTCACAGGTGCTATCCTTGCCCACGAGTTGATGCATGCTTGGTTACGCCTTAAAGGTTATCGCAACCTTAATCCTGAAGTAGAGGAAGGTATTTGTCAGGTTCTTTCTTACATGTGGCTTGAGGCAGAGGTAATGTCAGGTTCTAGAACCATGCCGTCAACATCATCATCATCGTCAGCTTCTTCATCTTCCTCCTCCTCGTACTCATCAAAGAAGGGTGCAAAATCTCAAGTTGAAAATAAATTGGGTGAATTTTTCATGAACCAAATAGCCAATGATTCTTCCCCTGCTTATGGTGGTGGCTTTAGAGCAGCCAATGAAGCTGTTAATAAGTATGGTCTACATTCTACTTTGGAGCATATTCGTTGGACTGGTAATTTCCCACTGTAA 1542 0.4144 MAPPSHINHLSHPCIYGDFVSSYSERKSGFMKWFGKIFKLGSSSRGRGGGRHIQQPVEENMVWPASARSLDDRARFRKEEEDLDHAIALSLSDDLKRPIRYRWRTGTDEDYAKALQDRMFSSAHPPYTPLPFYPRGYGVASHIKICGGCNQEILHGNCLGIGHSYFHPDCFRCHICHYPITEHEFSLSGKHPYHKSCFKELTHPKCEVCHQYIPINAAGLIEYRCHPYWNQKYCPSHEYDNTVRCCSCERLESRDERYLRLEDGRILCFECMESAITDTGECQPLYHAIRDYYEGMNMRIDQQVPMLLVGREALNEAIVGEKNGFHHMPETRGLCLSEEQTVTSVYRWPRIGGHRLNGMRSQPHKLNRKCEVTAILVLYGLPRLLTGAILAHELMHAWLRLKGYRNLNPEVEEGICQVLSYMWLEAEVMSGSRTMPSTSSSSSASSSSSSSYSSKKGAKSQVENKLGEFFMNQIANDSSPAYGGGFRAANEAVNKYGLHSTLEHIRWTGNFPL* 514
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr10g2063 513 MobiDBLite consensus disorder prediction 433 456 - -
Apr10g2063 513 PANTHER PROTEIN DA1-RELATED 2 20 513 IPR045218 -
Apr10g2063 513 ProSiteProfiles LIM domain profile. 144 204 IPR001781 -
Apr10g2063 513 Pfam LIM domain 146 199 IPR001781 -
Apr10g2063 513 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 172 237 - -
Apr10g2063 513 CDD LIM_DA1 146 198 - -
Apr10g2063 513 PANTHER TRANSCRIPTION FACTOR INTERACTOR AND REGULATOR LIM FAMILY-RELATED 20 513 - -
Apr10g2063 513 SMART lim_4 145 197 IPR001781 -
Apr10g2063 513 Pfam Protein DA1 295 507 IPR022087 -
Apr10g2063 513 Gene3D Cysteine Rich Protein 140 204 - -
Apr10g2063 513 ProSitePatterns LIM zinc-binding domain signature. 146 180 IPR001781 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr10g2063 Apr-Chr10 33404696 33409091 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Apr10g2063 DA1-like 3.7e-100 CL0126
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr10g2063 - - gmx:100798829 945.651
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr10g2063 10 33404696 33409091 Apr10g2063 10 33404696 33409091 ECH
Apr10g2063 10 33404696 33409091 Apr9g1370 9 23319377 23324787 PCT