Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr10g2058 ATGAATAAGCACTACTACTCAGTTTCTGTCCTTCACGCACCAATGGAGTCCACGCCAAGGCTCCTCCTCCTCCTCCTCCTCACGGTGGCCACGCTGATACTAACGCGCGCGACGCACGTGATGTCGGCGACGGCGTGTCCACCGTGCGGCAAAATGACGGTGCCGTTTCCTCTGAGCACAACGAGGACGTGCGGTGACCAGTCGTACAAGATCCGTTGCAGCAATTCGAGCACGCTCATGTTCGACACGCTGAACAACTCTTACCCAATCGAGTCCATAGATTCAAAAGGCCAAAGGTTGGTGATTCAGCCCGCACCATTAATAGCCAACACCTGCGTCTCCACCGATAAGGCGAAGGAGGGGATCCAACTGAACAATACTCTCCCTTTCAACATCACAAGCTCCAACACCATCATTTACCTTAACTGCACCCGCGAGCTTCTAATGTCTCCCCTTAACTGTTCCTCTTCTAGCATTTGCCATAACTACATCAACGCCACTTCTTCCGCTGCCACGTGTCAGTCTGGTCCTCTCTGCTGTAACTACCGAACCGGTGGCTCCAGTAACTCCTACATGATTCGCGTGAGGGATTCCGGTTGTAGCGCTTACTCGAGTTTCGTTAACCTTAACCCGGTTCTTCCCGTTAACCGGTGGCCCCAACCCGGGTTGGAGATTCAGTGGTTGTCGCCCCGGGAAACCGTATGTGTCTCCCAGGGTGATTGTGACTCTGCCACCTCCACTTGTGGACCCGACACGTCATCTCCCAATGGGATCAAACGCTGCTTTTGTATCAACGGACTTGTGTGGGACCCTATTCAGGGAGTGTGCACAAAAAGAATCACTTGCCAGAATCCCGATGGCTGTGGCGACTCATCCGACAAGACGGCGATCATAGCTGGTTTGATATGCGGAGTTGGAGCTGCACTGATCCTTGCCACCATTGTATTTTTTCTCTACAAACGGTACAAGCGCATCAAAGAAGCACAAGAGCGCCTAGCAAGAGAGCGAGAAGGAATTCTCAATGCAAGTGGCGGAGGCAGAAATGCTAAGCTTTTTTCCGGCAAAGAGATAAAGAAAGCCACAATTGACTTCTCCAGTGACCGTCTTCTTGGTGTTGGTGGGTATGGTGAAGTCTACAAAGGTGTTCTTCTAGATGGCACTGTGGTGGCTGTCAAGTGTGCTAAACTTGGAAACCCAAAAGGCACTGATCAAGTCCTCAATGAGGTTCGCATATTGTGCCAAGTCAACCACCGAAACCTTGTTGGTCTTTTAGGTTGCTGTGTGGAACTGGAGCAACCTATTATGGTCTATGAGTTCATAGAAAATGGGACCCTTCTCGATCATTTGCAAGGTCAAATGCCAAAGGGACGTGGTTTGCTTACTTGGACTCATCGCCTTCAAATTGCTCGTGATACTGCTGATGGTCTTGCTTATCTTCACTTCATGGCTGTGCCTCCTATATATCATAGAGATGTTAAGTCTAGCAACATTTTGCTAGATTTCAAGTTGAATGCTAAGGTTTCAGATTTTGGGTTGTCTAGGTTGGCTCAGACAGATATGAGTCATATATCTACTTGTGCTCAGGGCACTCTTGGGTATCTTGATCCTGAATATTATAGGAACTACCAATTAACTGATAAGAGTGATGTTTATAGTTTTGGGGTGGTGTTGCTTGAGCTTTTGACAGCTCAAAAGGCAATAGATTTCAACCGGCCTGCAGATGATGTGAACTTGGCTGTTTATGTACAACGGATGGTGATGGAGGAAAGGTTGATGGAGGTCATTGATCCCATGTTGAAGGATGGAACTACCGCTATGGAGATAGAGACGATGAAGGCGTTGGCGTTTCTTGCATTGAGTTGCTTGGAGGAAAGGAGACAGAACCGACCCTCAATGAAAGAGGTAGCAGAGGAGATTGACTATATTATTAGTATTGCCTCTGCAAAGGAAGTGGAGAAGTAG 1962 0.4837 MNKHYYSVSVLHAPMESTPRLLLLLLLTVATLILTRATHVMSATACPPCGKMTVPFPLSTTRTCGDQSYKIRCSNSSTLMFDTLNNSYPIESIDSKGQRLVIQPAPLIANTCVSTDKAKEGIQLNNTLPFNITSSNTIIYLNCTRELLMSPLNCSSSSICHNYINATSSAATCQSGPLCCNYRTGGSSNSYMIRVRDSGCSAYSSFVNLNPVLPVNRWPQPGLEIQWLSPRETVCVSQGDCDSATSTCGPDTSSPNGIKRCFCINGLVWDPIQGVCTKRITCQNPDGCGDSSDKTAIIAGLICGVGAALILATIVFFLYKRYKRIKEAQERLAREREGILNASGGGRNAKLFSGKEIKKATIDFSSDRLLGVGGYGEVYKGVLLDGTVVAVKCAKLGNPKGTDQVLNEVRILCQVNHRNLVGLLGCCVELEQPIMVYEFIENGTLLDHLQGQMPKGRGLLTWTHRLQIARDTADGLAYLHFMAVPPIYHRDVKSSNILLDFKLNAKVSDFGLSRLAQTDMSHISTCAQGTLGYLDPEYYRNYQLTDKSDVYSFGVVLLELLTAQKAIDFNRPADDVNLAVYVQRMVMEERLMEVIDPMLKDGTTAMEIETMKALAFLALSCLEERRQNRPSMKEVAEEIDYIISIASAKEVEK* 654
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr10g2058 653 Gene3D Phosphorylase Kinase; domain 1 326 439 - -
Apr10g2058 653 Pfam Wall-associated receptor kinase galacturonan-binding 46 102 IPR025287 GO:0030247
Apr10g2058 653 Gene3D Transferase(Phosphotransferase) domain 1 440 652 - -
Apr10g2058 653 CDD TM_EGFR-like 295 327 - -
Apr10g2058 653 ProSitePatterns Serine/Threonine protein kinases active-site signature. 487 499 IPR008271 GO:0004672|GO:0006468
Apr10g2058 653 ProSitePatterns Protein kinases ATP-binding region signature. 370 392 IPR017441 GO:0005524
Apr10g2058 653 CDD STKc_IRAK 370 640 - -
Apr10g2058 653 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 34 648 IPR045274 GO:0007166
Apr10g2058 653 SUPERFAMILY Protein kinase-like (PK-like) 348 637 IPR011009 -
Apr10g2058 653 ProSiteProfiles Protein kinase domain profile. 364 642 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr10g2058 653 SMART serkin_6 364 642 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr10g2058 653 Pfam Protein tyrosine and serine/threonine kinase 367 638 IPR001245 GO:0004672|GO:0006468
Apr10g2058 653 PANTHER OS05G0318100 PROTEIN 34 648 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr10g2058 Apr-Chr10 33365507 33368461 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr10g2058 15 652 Receptor kinase-like Gene Family AT5G02070 51.131 0.0 647
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK_LRK10L-1 Apr10g2058 PK_Tyr_Ser-Thr 7.8e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr10g2058 - - gmx:100305415 1082.78
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr10g2058 10 33365507 33368461 Apr10g2058 10 33365507 33368461 ECH