Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr10g2051 ATGGCTGGGATTTGCTGTGGTGTTGTTGGAGAAGGTGACACTCCCGCTCCAATTGAGCCAAGTTCACGCCCTTCCCGGCGCCGGAGTTTGGACCTTTTACCGTTAAAATACATAGCTGATATGGCAGTGCCGCCGCCCGAGGGTTCTCGGAAACGTCCTAAGTTGGATCTCTCTCCCAGGGATTGCCAAAATGCTGTTGAGAATTGCGAAAAATCCAAGGTTGAGAATTGCAAAAAATCCAAGGTAAACGACAGGAAAAGTGTAATGGAACTTGAAGAGTGTCCCAAGTTTGGCGTGACGTCTGTCTGTGGGAGAAGAAGGGACATGGAAGATTCCTTTTCGGTGCGTCCTTCCTTCTCGCGTGAAGGCATTCACTACTTCGGTGTTTTCGACGGTCACGGTTGCTCTCACGTTGCGACCATGTGTAAGGAGCGCCTACACGAGATTGTGAATGAGCAGATTAACACGGCCCCAGAGAATTTAGACTGGAAATCCACCTTGGAACACAGTTTCGCTCGCATGGACGACGAGGTTCAGAGTTGGAGTCAGACCAACCAGACCTTCACTTGCAGGTGCGAGCTTCAAACTCCTCACTGCGACGCTGTCGGATCCACCGCCGTTGTTGCTATCGTCACGCCGGACAAGCTTGTTGTCTCCAATTGCGGCGATTCACGCGCAGTTCTCTGCCGCAACGGCGTTGCCATCCCGCTCTCCTCCGATCACAAGCCCGACCGACCCGACGAATTGCTTCGGGTTCAAGCTGCGGGAGGGCGCGTGATTTATTGGGATGGGCCCAGAGTGCTTGGAGTGTTGGCTATGTCACGAGCCATAGGTGACAATTATCTGAAGCCATACGTGATTTCGGAACCGGAGGTCACGGTAAAGGAACGAACGGACGAGGATGAGTGTTTGATACTGGCGAGTGATGGGTTGTGGGATGTTGTGTCAAACGACACCGCGTGTGGGGTGGTGAGGATGTGCCTGAAGGCGCAGAAGCCACCGTCGCCACCTGGGTCTCCTGGTAGTGATGTGGCAGCAGACGGTTCGGACCGGGCTTGCTCGGATGCGTCGATTCTGTTGACGAAGTTGGCCTTAGCGAGGCATAGTTCGGATAATGTGAGCGTGGTGGTGGTTGATTTGAGGAGGGATCAACGACAATCGTCAAATTCCAAAGACGTTAATTGA 1185 0.5325 MAGICCGVVGEGDTPAPIEPSSRPSRRRSLDLLPLKYIADMAVPPPEGSRKRPKLDLSPRDCQNAVENCEKSKVENCKKSKVNDRKSVMELEECPKFGVTSVCGRRRDMEDSFSVRPSFSREGIHYFGVFDGHGCSHVATMCKERLHEIVNEQINTAPENLDWKSTLEHSFARMDDEVQSWSQTNQTFTCRCELQTPHCDAVGSTAVVAIVTPDKLVVSNCGDSRAVLCRNGVAIPLSSDHKPDRPDELLRVQAAGGRVIYWDGPRVLGVLAMSRAIGDNYLKPYVISEPEVTVKERTDEDECLILASDGLWDVVSNDTACGVVRMCLKAQKPPSPPGSPGSDVAADGSDRACSDASILLTKLALARHSSDNVSVVVVDLRRDQRQSSNSKDVN* 395
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr10g2051 394 PANTHER ALPHABET, ISOFORM E-RELATED 24 385 - -
Apr10g2051 394 CDD PP2Cc 96 329 IPR001932 -
Apr10g2051 394 PANTHER PROTEIN PHOSPHATASE 2C-LIKE PROTEIN 24 385 - -
Apr10g2051 394 Pfam Protein phosphatase 2C 97 372 IPR001932 -
Apr10g2051 394 ProSiteProfiles PPM-type phosphatase domain profile. 96 380 IPR001932 -
Apr10g2051 394 SUPERFAMILY PP2C-like 93 381 IPR036457 -
Apr10g2051 394 SMART PP2C_SIG_2 108 380 IPR001932 -
Apr10g2051 394 SMART PP2C_4 86 378 IPR001932 -
Apr10g2051 394 ProSitePatterns PPM-type phosphatase domain signature. 126 134 IPR000222 GO:0043169
Apr10g2051 394 Gene3D - 91 390 IPR036457 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr10g2051 Apr-Chr10 33314445 33316629 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr10g2051 1 390 PP2C-type Phosphatase Gene Family AT3G11410 59.854 1.02e-142 410
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr10g2051 K14497 - gmx:100776356 624.78
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr9g1358 9 23208907 23210821 Apr10g2051 10 33314445 33316629 ECH
Apr10g2051 10 33314445 33316629 Apr10g2051 10 33314445 33316629 ECH
Apr10g2051 10 33314445 33316629 Apr9g1358 9 23208907 23210821 PCT