Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr10g2043 ATGGCGAATCGTTGGTGGGCTGGGAATGTGGGAATGAGAAGAGAGCAAGAGTTGATGGAAAACAACACCAACAACAACGTGAACACAACTCCAACTAACAGTAGCAACAGCAACACAAACGCCAACACCAACACGACCGAGGACGAGGAAAGCAGGGACAACGGGGAAGAGCAGAACCCAGGAAGCCACGATGGGGCGGAACCGGGGAGCAGCGGGAGAAGGCCACGTGGCAGGCCACCAGGGTCCAAGAACAAGCCCAAGCCACCCATTGTTATCACCAAGGAAAGCCCAAACGCGCTACGAAGCCACGTGTTGGAAATCACCACCGGGAGTGACGTGGTGGAGAGCATCGCCGCCTTCGCTAACCGTCGCCACCGTGGCGTGTCGGTGCTTAGTGGGAGTGGCATTGTCACCAACGTCACTCTCCGGCAACCGGCTGCACCCGGTGGAATTATAACCCTTCATGGAAGGTTCGAGATACTCTCTCTCTCTGGCGCGTTCTTGCCTTCTCCTTCTCCTCCTGGTGCCACCGGACTCACCGTGTATTTAGCCGGTGGTCAGGGACAGGTCGTTGGCGGCGCCGTGGCGGGTTCGTTGGTTGCTTCGGGGCCTGTGATGGTGATTGCTGCTACTTTTGCAAATGCTACTTATGAGAGGTTGCCATTGGAGGATGAACAAGGTGAGGAAGAAATGCAAGTGCAACAACAGCAACCGGGTGTTAGTTCAGCAACTCCGGGTTCTCAAGGTTTGGGCGAACAGGTTTCAATGCCTATGTATAATTTGCCTCCGAATTTGCTGCACAATGGTCAGAATATGCCTCATGATGTGTTTTGGGGACCCCCACCTCGTCCTCCTCCGTCTTTCTGA 867 0.5502 MANRWWAGNVGMRREQELMENNTNNNVNTTPTNSSNSNTNANTNTTEDEESRDNGEEQNPGSHDGAEPGSSGRRPRGRPPGSKNKPKPPIVITKESPNALRSHVLEITTGSDVVESIAAFANRRHRGVSVLSGSGIVTNVTLRQPAAPGGIITLHGRFEILSLSGAFLPSPSPPGATGLTVYLAGGQGQVVGGAVAGSLVASGPVMVIAATFANATYERLPLEDEQGEEEMQVQQQQPGVSSATPGSQGLGEQVSMPMYNLPPNLLHNGQNMPHDVFWGPPPRPPPSF* 289
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr10g2043 288 ProSiteProfiles PPC domain profile profile. 97 234 IPR005175 -
Apr10g2043 288 MobiDBLite consensus disorder prediction 224 253 - -
Apr10g2043 288 CDD DUF296 101 183 IPR005175 -
Apr10g2043 288 PIRSF ESCAROLA 13 287 IPR014476 GO:0003680
Apr10g2043 288 MobiDBLite consensus disorder prediction 231 253 - -
Apr10g2043 288 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 22 284 - -
Apr10g2043 288 MobiDBLite consensus disorder prediction 20 97 - -
Apr10g2043 288 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 22 284 IPR014476 GO:0003680
Apr10g2043 288 SUPERFAMILY AF0104/ALDC/Ptd012-like 97 225 - -
Apr10g2043 288 MobiDBLite consensus disorder prediction 20 45 - -
Apr10g2043 288 Pfam Plants and Prokaryotes Conserved (PCC) domain 101 213 IPR005175 -
Apr10g2043 288 Gene3D - 100 239 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr10g2043 Apr-Chr10 33247342 33248208 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr10g2043 1 288 AT-hook Motif Nuclear Localized (AHL) Family AT3G55560 55.161 1.45e-79 241
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr10g2043 - - gmx:102667174 376.711
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr10g2043 10 33247342 33248208 Apr10g2043 10 33247342 33248208 ECH