Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr10g2041 ATGACAGGGTTTGGCTCTTCATGTGGAGCATGCAAGTTCCTACGGAGAAAGTGCACAAGAGATTGTGTATTTGCTCCTTACTTCTCATATGATCAAGCTGCAACCTCCTTTGCAGCAGTGCACAAGGTTTTTGGTGCTAGTAATGTCTCCAGGCTCTTGTTACACCTTCCAATGCAGAATAGAAGTGATGCTGCCATCACCATATCTTTTGAAGCATTGGCTCGTATGCAGGATCCTATATATGGTTGTGTTGCTCATATCTATGCATTGCAGCAACAGGTTGCTAGCTTGCAAGAGGAGATAGGTATTCTAGGAAATCTAATGGAGAACACCACAGTTGGTGTTGATAATTGTTCAAGTGGACTGGTGAACCCAAACAACGGGTTAGAATATGTTTTGACACAAAATGATTACCATACCTTGGACAGAGAGATGAATAGAGAGTTTCCTAATGCAAATGAGTTGGAAGACCATTTAGATCCCAACTCAGCAGAGAAGTTTTTGTCTGGAATTGACCAGGAGTTCTTCCTGAATCATCCATGGTTCAAGCATAGTAATGGCATAATAAGTTAG 573 0.4171 MTGFGSSCGACKFLRRKCTRDCVFAPYFSYDQAATSFAAVHKVFGASNVSRLLLHLPMQNRSDAAITISFEALARMQDPIYGCVAHIYALQQQVASLQEEIGILGNLMENTTVGVDNCSSGLVNPNNGLEYVLTQNDYHTLDREMNREFPNANELEDHLDPNSAEKFLSGIDQEFFLNHPWFKHSNGIIS* 191
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr10g2041 190 Pfam Lateral organ boundaries (LOB) domain 7 102 IPR004883 -
Apr10g2041 190 ProSiteProfiles LOB domain profile. 6 108 IPR004883 -
Apr10g2041 190 PANTHER LOB DOMAIN-CONTAINING PROTEIN 33 1 186 - -
Apr10g2041 190 PANTHER LOB DOMAIN CONTAINING PROTEIN 1 186 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr10g2041 Apr-Chr10 33235211 33235943 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr10g2041 1 183 AS2 family AT5G06080 53.005 2.61e-58 179
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Apr10g2041 LOB 4.1e-35 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr10g2041 K13945 - gmx:100809636 262.692
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr10g2041 10 33235211 33235943 Apr10g2041 10 33235211 33235943 ECH