Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr10g2039 ATGGCCAAAACACTCGTGCTTTGTCTCTATGTTCTGATCCTTTTAGCCTCAAACCATGTAAAGTCTCAACATGAAGAGCTTTTCTTCAACGGATTTGATGGTGCTGCCACCAACATAAGCTTAAACGGAGGAGCAGTGATTGAGCACAAGGGCTTACTTCGCCTAACAAACGTCACTAGCAGAGTAATTGGGCATGCGTTTTATTCAACCCCGATAAAGTTCAAGAGCAAGAACTCTTCCACCGAGGCCAAAGTTTTCTCCTTTTCCACCGCTTTTGCCTTTTCAATCATCCCCCAGTACCCAAAACTCGGTGGCCATGGATTTGCCTTCATCATTTCTCCCTCCAACGTGCTTCAAGGCGCGGATCCTAGCCAATACTTGGGCCTCCTCAACCCAAACAACGTTGGCAACTTCTCAAACCACCTCTTCGCAGTGGAGTTCGACACTGTCCAAGATTTCGAATTCCAAGACATCAATGACAACCATGTAGCCATCGACCTCAACAACTTGGTTTCCAACAAATCAGTTGACGCTGCTTTTTTCACTGATGGGTCAAAGCAAAACCTTAATTTGAAGAGTGGCAAGGTGATTCAAGCATGGGTTGACTATGATTCCTCAAAGAATCAATTAGAAGTTAGACTCTCCCCAACTTCTTCAAAACCCACTTCTCCAATCTTGTCATACCAAGTAGATCTCTCCCCAATTCTCATAGATTCTATGTATGTTGGTTTTTCTTCTTCAACAGGGTTGCTTGCTAGCTCCCACTATATCTTGGGTTGGAGCTTCAAAATAAACGGAGAGGCCAAAACCCTTTCTTTGAAAAACCTCCCTTCACTCTCTACGTCTAACAAAACACACAAACCCTTAATCTTAGGACTCTCCCTTTCCGCTTTTATTTTAATAATTGCCACAATTGCTTTGGCATTTTATCTCTGTAGAAACATTAAAAATGCCGAAGTGATCGAGGCTTGGGAGCTAGATGTTGGTCCACACAGGTTCACATACAAAGAACTGAATATAGCCACGAGAGGGTTCAAAGACAAGAATCTTCTTGGGTTTGGAGGGTTCGGTAGAGTTTACAAAGGGGTGCTCCCAAACTCCAACACCGAAATCGCCGTGAAGCGAATCTCCCACGAATCAAAACAAGGTATGCAAGAGTTTTTCTCGGAAATCTCAACCATTGGAAGGCTTCGACACAGAAACCTCGTACAGTTACTAGGTTGGTGTCGGAAACACAACGACCTTATTATAGTCTACGATTTCATGCAAAACGGAAGCTTGGACAAGTACCTATTCGACCCACCAAGAGGAACATTAGCATTAACGTGGGAACAAAGGTTTAAGATCATAAAAGGGGTTGCTTCGGGGCTTGTTTATTTACACGAAGAATGGGAACAAACGGTGATTCACAGAGACGTCAAAGCAGGGAACGTTCTTTTAGACGGTGAAATGAATGGAAGATTGGGTGATTTCGGTTTGGCGAAGCTTTACGAGCATGGTTCGAAGGCCAACACAACGAGGGTGGTGGGAACATTGGGGTACCTTGCACCTGAGCTCACACGAACGGGGAAACCCTCGACGAGTTCCGATGTGTTTGCTTTTGGGGCGTTGTTGTTGGAAGTGGCGTGTGGGAGAAGACCCATTGAGGCCAAGGCGTTGCCGGAGGAGTTGGTGTTGGTGGAATGGGTGTGGGAGCGGTGGCGAGTGGGGGCGGTGTTGGAGGTGATCGATCCTAAGTTGGATGGGGTTTTTGATGAGATGGAGGCGTTGTTGGTGCTGAAGTTGGGTTTGTTGTGTTCCGATGAGTCGCCGGACAATAGGCCTAGTATGAGGCAGGTTTTGAGGTACTTGGAGGGGGAGGTGGTGTTACCGCCGGTGGAGGTGAAAAAGGGTGGCGTCGGTGGTGGTGGTGGTGGAGCTGGTGGGTTTGGGGATTTGGTGCGTTCGTATACGTCGTCGTTTTTTGAGAGGGCAAATACGTGGTCGTCGACCGGTGATGACGTGGAGGGTGGCTCTGCATCATCTATTTCACTTTCCGGTGGCCGGTAG 2049 0.4714 MAKTLVLCLYVLILLASNHVKSQHEELFFNGFDGAATNISLNGGAVIEHKGLLRLTNVTSRVIGHAFYSTPIKFKSKNSSTEAKVFSFSTAFAFSIIPQYPKLGGHGFAFIISPSNVLQGADPSQYLGLLNPNNVGNFSNHLFAVEFDTVQDFEFQDINDNHVAIDLNNLVSNKSVDAAFFTDGSKQNLNLKSGKVIQAWVDYDSSKNQLEVRLSPTSSKPTSPILSYQVDLSPILIDSMYVGFSSSTGLLASSHYILGWSFKINGEAKTLSLKNLPSLSTSNKTHKPLILGLSLSAFILIIATIALAFYLCRNIKNAEVIEAWELDVGPHRFTYKELNIATRGFKDKNLLGFGGFGRVYKGVLPNSNTEIAVKRISHESKQGMQEFFSEISTIGRLRHRNLVQLLGWCRKHNDLIIVYDFMQNGSLDKYLFDPPRGTLALTWEQRFKIIKGVASGLVYLHEEWEQTVIHRDVKAGNVLLDGEMNGRLGDFGLAKLYEHGSKANTTRVVGTLGYLAPELTRTGKPSTSSDVFAFGALLLEVACGRRPIEAKALPEELVLVEWVWERWRVGAVLEVIDPKLDGVFDEMEALLVLKLGLLCSDESPDNRPSMRQVLRYLEGEVVLPPVEVKKGGVGGGGGGAGGFGDLVRSYTSSFFERANTWSSTGDDVEGGSASSISLSGGR* 683
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr10g2039 682 PANTHER L-TYPE LECTIN-DOMAIN RECEPTOR KINASE IV.2-LIKE PROTEIN 4 682 - -
Apr10g2039 682 SUPERFAMILY Protein kinase-like (PK-like) 326 622 IPR011009 -
Apr10g2039 682 MobiDBLite consensus disorder prediction 661 682 - -
Apr10g2039 682 ProSiteProfiles Protein kinase domain profile. 345 623 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr10g2039 682 Gene3D - 26 265 - -
Apr10g2039 682 CDD lectin_legume_LecRK_Arcelin_ConA 29 266 IPR001220 GO:0030246
Apr10g2039 682 PANTHER - 4 682 - -
Apr10g2039 682 SUPERFAMILY Concanavalin A-like lectins/glucanases 26 279 IPR013320 -
Apr10g2039 682 Pfam Legume lectin domain 28 276 IPR001220 GO:0030246
Apr10g2039 682 SMART serkin_6 345 617 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr10g2039 682 ProSitePatterns Serine/Threonine protein kinases active-site signature. 468 480 IPR008271 GO:0004672|GO:0006468
Apr10g2039 682 Gene3D Transferase(Phosphotransferase) domain 1 422 630 - -
Apr10g2039 682 CDD STKc_IRAK 351 619 - -
Apr10g2039 682 ProSitePatterns Protein kinases ATP-binding region signature. 351 374 IPR017441 GO:0005524
Apr10g2039 682 Gene3D Phosphorylase Kinase; domain 1 330 421 - -
Apr10g2039 682 Pfam Protein kinase domain 345 552 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr10g2039 Apr-Chr10 33222039 33224429 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr10g2039 20 626 Receptor kinase-like Gene Family AT3G55550 61.175 0.0 759
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_L-LEC Apr10g2039 Pkinase 1.4e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr10g2039 - - gmx:100787552 909.827
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr9g1352 9 23142390 23144346 Apr10g2039 10 33222039 33224429 ECH
Apr4g1925 4 27323786 27325831 Apr10g2039 10 33222039 33224429 ECH
Apr10g2039 10 33222039 33224429 Apr10g2039 10 33222039 33224429 ECH