Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Apr10g2034 | ATGATGTCTTCGGGGACATCCTCGTATTGGTGTTACAGATGCAGTCGATTCGTGAGCGTGTGGCGACAAGACACGGTGGTTTGTCCCGATTGTGACGGCGGGTTCATCGAGGAAATTGAGCATCCGGCGCGTTCCGTACACGTCGACGGCCGCCGGCGAAGGTTTCCGGCTGCGGCGATGTACATGATTGGCCAACGCCCAAATTTCGATCAGAATTCCCGCCCTTCTCTCCGGCGAAGCCGCCGGAATGGTGGCGACCGGTCGCCGTTCAATCCGGTGATCGTGCTCCGCGGCGGCGCGGTGACGGAGGAGGGAGGAGAGAGTCGTGGGTTTGAGCTTTTCTATGATGATGGTGCTGGTTCTGGTCTTAGGCCTTTGCCTCCAAGCATGTCAGAGTTTCTTCTTGGATCTGGTTTTGATAGGCTTTTGGAACAGCTTTCTCAGATTGAGATAAACGGTATTGGGAGGTATGAACATCCTCCTGCTTCAAAAGCTGCCATTGATTCATTGCCCACTATTGAGATTGATGAGAGTCATTTAGCAATGGAATCACACTGTGCTGTTTGTAAGGAGCCTTTTGAGTTGAACACTGCGGTTAGGGAAATGCCTTGTAAGCATATATACCATCCTGATTGCATATTGCCGTGGCTTGCACTTCACAATTCTTGCCCCGTTTGTCGCCATGAGTTACCTTCTGATGCCCCAAATCCACCTCCTTCAGGGCAAAATTTAAGCTTAAATGAGGAAGAGAATGTGGGGTTAACCATTTGGAGGTTACCTGGTGGAGGGTTTGCTGTGGGAAGGTTTTCTGGTGGGAGAAGAGGTGGAGAGAGGGAGCTTCCTGTTGTTTACACTGAAATGGATGGTGGGTTTAACAATGGTGGTGAACCTAGGAGGATTTATTGGTCTTCTAGAGGGAATAGAGGGAGAGAGAGAGGGAGGTTGAGTAGGTTTTTTAGCAATTTGTTTGGTTGTTTCATGGTTGGAGTTAGAACTCAGCGTTCTGATTCTAGTGGAGAGTCTCGGTCTATGAGGGCAAGTTCATCATCTCGTTCTAGTGTTGATCCTTCTCCACGTTCACGTAGGACTTGGTCTATGGATGTGAATAGTGGAATGAGGCAATGGTAA | 1128 | 0.4947 | MMSSGTSSYWCYRCSRFVSVWRQDTVVCPDCDGGFIEEIEHPARSVHVDGRRRRFPAAAMYMIGQRPNFDQNSRPSLRRSRRNGGDRSPFNPVIVLRGGAVTEEGGESRGFELFYDDGAGSGLRPLPPSMSEFLLGSGFDRLLEQLSQIEINGIGRYEHPPASKAAIDSLPTIEIDESHLAMESHCAVCKEPFELNTAVREMPCKHIYHPDCILPWLALHNSCPVCRHELPSDAPNPPPSGQNLSLNEEENVGLTIWRLPGGGFAVGRFSGGRRGGERELPVVYTEMDGGFNNGGEPRRIYWSSRGNRGRERGRLSRFFSNLFGCFMVGVRTQRSDSSGESRSMRASSSSRSSVDPSPRSRRTWSMDVNSGMRQW* | 376 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Apr10g2034 | 375 | MobiDBLite | consensus disorder prediction | 334 | 375 | - | - | |
| Apr10g2034 | 375 | PANTHER | E3 UBIQUITIN-PROTEIN LIGASE RING1-LIKE PROTEIN | 3 | 324 | - | - | |
| Apr10g2034 | 375 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 152 | 233 | IPR013083 | - | |
| Apr10g2034 | 375 | PANTHER | E3 UBIQUITIN-PROTEIN LIGASE PRAJA | 3 | 324 | - | - | |
| Apr10g2034 | 375 | MobiDBLite | consensus disorder prediction | 67 | 90 | - | - | |
| Apr10g2034 | 375 | SMART | ring_2 | 186 | 226 | IPR001841 | - | |
| Apr10g2034 | 375 | SUPERFAMILY | RING/U-box | 166 | 239 | - | - | |
| Apr10g2034 | 375 | Pfam | Ring finger domain | 185 | 227 | IPR001841 | - | |
| Apr10g2034 | 375 | CDD | RING-H2_RNF126_like | 186 | 227 | - | - | |
| Apr10g2034 | 375 | Pfam | zinc-ribbon | 8 | 39 | IPR039525 | GO:0061630 | |
| Apr10g2034 | 375 | Pfam | Protein of unknown function (DUF1117) | 252 | 353 | IPR010543 | - | |
| Apr10g2034 | 375 | ProSiteProfiles | Zinc finger RING-type profile. | 186 | 227 | IPR001841 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Apr10g2034 | Apr-Chr10 | 33196126 | 33199040 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Apr10g2034 | 125 | 244 | C3H Transcription Factor Family | AT5G01980 | 40.000 | 1.50e-24 | 102 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Apr10g2034 | - | K11982 | gmx:100807324 | 572.392 |