Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr10g2033 ATGGCCTTCTTCTCCCCCCTTATTCTGCTTCTTCCTTCTCTTACAATTACCCTTCTCATTATTCTCCTCCAAATCCAGACAAGGGCCTCTTCTCTCTCATCTTCCCCACAAAATCTCCTCGTTTTGCCTTTAAAAACCCAGACACTCCCACATGGCTATGTCTCGGTTCAAAGGCCTTCTTCACGTAGGCTCTCTTTCCATCACAACGTAACCTTAACAGTTTCACTAACCGTAGGGTCGCCCCCACAAAGCGTTACCATGGTCCTCGACACAGGGAGTGAACTCTCATGGCTACACTGCAAAAAGTTCCCAAATTTAAACAACCCCATTTTCAACCCACTCCTTTCTTCCTCATACACCCCCACACCATGCACCTCACCCGTTTGCAAAACCCGGACCCGGGATTTCTCCATACCCGTTTCTTGTGACCCGAGGAAACTCTGCCATGCCACCGTCTCCTACGCCGACGCCACCTCCATCGAAGGCAACCTCGCCGCCGACACATTCTTCATCGGTGGGTCGGGTCAACCCGGAACCATATTCGGATGCATGGATTCCGGGTTTAGCTCCAATACCAACGAGGACTCCAAAACAACCGGGTTAATGGGCCTGAACCGCGGGTCACTCTCGTTCGTGACCCAAATGGGCCTTCCCAAATTCTCGTACTGCATCTCCGGCCACGACTCCTCCGGCGTGTTGCTCTTCGGCGACGCCACGTTCTCATGGGTTGGACCCTTGAAGTACACGCCACTCGTCAAAATCAACACCCCATTACCCTACTTCGACCGGGTCGCATACACGGTCCGGCTGGAGGGAATTCGGGTCGGGTCAAAACAACTACAGGTACCTAAGTCGATTTTCGCGCCTGATCATACAGGTGCGGGTCAAACCATGGTGGATTCGGGTACCCAGTTCACGTTTCTTCTCGGACCGGTTTACACCGCTTTGAGGAACGAGTTCGCGGCACAAACGAAAGGGGTGCTGACCCTTTTGGAGGATCCGAATTTCGTGTTTCAGGGAGCGATGGATTTGTGTTTTCGGGTGAAGTCGGGTCTCCCGGCGTTACCGGCGGTGACGTTGGTGTTTGATGGGGCGGAGATGAGTGTTTCCGGTGAGAGGTTGTTATATCGGGTGGATGACGTGGCAAAGGGCGGTAGTAATAGTGTGTATTGTTTCACGTTTGGGAACTCAGACTTGTTGGGAATAGAGGCATATGTTATTGGGCATCATCAACAGCAGAACGTGTGGATGGAGTTTGATTTGGTCAACTCTAGAGTTGGATTTGCTGACACTAAGTGTGAACTTGCTAGTCAACGACTAGGTTTGGGTCCTTTTTAG 1338 0.5172 MAFFSPLILLLPSLTITLLIILLQIQTRASSLSSSPQNLLVLPLKTQTLPHGYVSVQRPSSRRLSFHHNVTLTVSLTVGSPPQSVTMVLDTGSELSWLHCKKFPNLNNPIFNPLLSSSYTPTPCTSPVCKTRTRDFSIPVSCDPRKLCHATVSYADATSIEGNLAADTFFIGGSGQPGTIFGCMDSGFSSNTNEDSKTTGLMGLNRGSLSFVTQMGLPKFSYCISGHDSSGVLLFGDATFSWVGPLKYTPLVKINTPLPYFDRVAYTVRLEGIRVGSKQLQVPKSIFAPDHTGAGQTMVDSGTQFTFLLGPVYTALRNEFAAQTKGVLTLLEDPNFVFQGAMDLCFRVKSGLPALPAVTLVFDGAEMSVSGERLLYRVDDVAKGGSNSVYCFTFGNSDLLGIEAYVIGHHQQQNVWMEFDLVNSRVGFADTKCELASQRLGLGPF* 446
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr10g2033 445 CDD pepsin_A_like_plant 71 433 IPR034161 -
Apr10g2033 445 PANTHER EUKARYOTIC ASPARTYL PROTEASE FAMILY PROTEIN 16 442 - -
Apr10g2033 445 SUPERFAMILY Acid proteases 72 433 IPR021109 -
Apr10g2033 445 Pfam Xylanase inhibitor N-terminal 74 237 IPR032861 -
Apr10g2033 445 ProSiteProfiles Peptidase family A1 domain profile. 72 429 IPR033121 -
Apr10g2033 445 ProSitePatterns Eukaryotic and viral aspartyl proteases active site. 87 98 IPR001969 GO:0004190|GO:0006508
Apr10g2033 445 Gene3D Acid Proteases 58 237 IPR021109 -
Apr10g2033 445 PRINTS Pepsin (A1) aspartic protease family signature 78 98 IPR001461 GO:0004190|GO:0006508
Apr10g2033 445 PRINTS Pepsin (A1) aspartic protease family signature 236 249 IPR001461 GO:0004190|GO:0006508
Apr10g2033 445 PRINTS Pepsin (A1) aspartic protease family signature 297 308 IPR001461 GO:0004190|GO:0006508
Apr10g2033 445 Pfam Xylanase inhibitor C-terminal 265 429 IPR032799 -
Apr10g2033 445 Gene3D Acid Proteases 241 438 IPR021109 -
Apr10g2033 445 PANTHER ASPARTYL PROTEASE-RELATED 16 442 IPR001461 GO:0004190|GO:0006508
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr10g2033 Apr-Chr10 33186715 33188355 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr10g2033 32 434 Miscellaneous Gene Families AT1G44130 23.434 6.95e-18 83.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr10g2033 - - gmx:100783835 681.789
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr9g1347 9 23103584 23104717 Apr10g2033 10 33186715 33188355 ECH
Apr4g1914 4 27126600 27128789 Apr10g2033 10 33186715 33188355 ECH
Apr10g2033 10 33186715 33188355 Apr10g2033 10 33186715 33188355 ECH