Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr10g2022 ATGGGTTGCTTCTTTAGTGCAACTGCAAGGATCAAAGCTGAGAGCCCTCCACGTAATGGTTTGAATTCAAAGGATGGTGGCAGAGAAGAGGATGGTTTGAGTGGTGTAAGCAGCAAGGTGTCCTCTTCATCTTTGCTTGTAATTCCTCAGACTGAGGGTGAGATATTGCAGTCCACCAATTTGAAGAGTTTCACATTCAATGAGCTAAGAACTGCTACAAGAAATTTTCGTCCAGATAGTATGGTAGGTGAAGGTGGATTTGGTTGTGTTTATAAGGGTTGGATTGATGAGCAGACACTTGCCCCTACTAAACCTGGGACAGGAATGGTCATTGCTGTGAAGAGGCTTAACCAAGAAGGCTACCAAGGCCACAGTGAATGGTTGACAGAAATCAATTACCTGGGGCAGCTGCGTCATCCTAATCTTGTGAAACTAGTGGGTTACAGCTTAGAGGATGACCACAGGATTTTGGTGTATGAATTTGTGGCCAAGTGTAGTTTGGATAATCATTTATTTAGGAGGTCTTCTTACTTTCAACCACTCTCTTGGAACATCCGTATGAAGGTTGCTCTCGATGCTGCCAAGGGTCTGGCATTTCTTCACAGTGATGAAGTAGATGTCATATTTAGAGACTTCAAAACTTCTAATATCTTACTTGATTCTGACTATAATGCAAAACTCTCTGATTTTGGGTTGGCAAAAAATGGACCAACAGATGATAAGAGCCATGTCTCTACAAGGGTATTGGGCACCTTTGGCTATGCAGCTCCTGAATATATAGCCACAGGGCACCTAACCAAAAAGAGTGATATATACAGTTTTGGAGTTGTTCTCCTTGAAATTATGTCAGGAAAACGTGCATTGGATAAAAACAGGCCAAATGGGGAACATAGCTTAGTTGAATGGGCCAAGCCACTCCTCACAAGCAAACGCAAGATCTCACAAGTTATGGATGCACGTATAGAAGGCCAATACTCATTGCATGAAGCAATGAAAGTGGCTCACCTTGCAATTCAATGCCTATCTGTAGAAACAAAAGTTAGACCAAACATTGATGAGGTGGTGAGATCATTGGAACAACTTCAGGATTCCAAAGACAAAGTTGGTGCTGTGGGAAGTTCTCAGCTGCAATATCAAACTTGGAAAAAATAG 1152 0.4219 MGCFFSATARIKAESPPRNGLNSKDGGREEDGLSGVSSKVSSSSLLVIPQTEGEILQSTNLKSFTFNELRTATRNFRPDSMVGEGGFGCVYKGWIDEQTLAPTKPGTGMVIAVKRLNQEGYQGHSEWLTEINYLGQLRHPNLVKLVGYSLEDDHRILVYEFVAKCSLDNHLFRRSSYFQPLSWNIRMKVALDAAKGLAFLHSDEVDVIFRDFKTSNILLDSDYNAKLSDFGLAKNGPTDDKSHVSTRVLGTFGYAAPEYIATGHLTKKSDIYSFGVVLLEIMSGKRALDKNRPNGEHSLVEWAKPLLTSKRKISQVMDARIEGQYSLHEAMKVAHLAIQCLSVETKVRPNIDEVVRSLEQLQDSKDKVGAVGSSQLQYQTWKK* 384
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr10g2022 383 ProSiteProfiles Protein kinase domain profile. 76 361 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr10g2022 383 MobiDBLite consensus disorder prediction 14 37 - -
Apr10g2022 383 ProSitePatterns Protein kinases ATP-binding region signature. 82 114 IPR017441 GO:0005524
Apr10g2022 383 SUPERFAMILY Protein kinase-like (PK-like) 56 360 IPR011009 -
Apr10g2022 383 Pfam Protein tyrosine and serine/threonine kinase 80 358 IPR001245 GO:0004672|GO:0006468
Apr10g2022 383 Gene3D Phosphorylase Kinase; domain 1 51 161 - -
Apr10g2022 383 PANTHER OS01G0588500 PROTEIN-RELATED 26 368 - -
Apr10g2022 383 PANTHER KINASE 1B 26 368 - -
Apr10g2022 383 CDD STKc_IRAK 82 361 - -
Apr10g2022 383 Gene3D Transferase(Phosphotransferase) domain 1 163 378 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr10g2022 Apr-Chr10 33067958 33070876 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr10g2022 54 366 Glycoside Hydrolase AT3G07070 45.541 3.05e-97 294
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Apr10g2022 PK_Tyr_Ser-Thr 7.1e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr10g2022 - - gmx:106795104 628.632
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr10g2022 10 33067958 33070876 Apr10g2022 10 33067958 33070876 ECH
Apr10g2022 10 33067958 33070876 Apr9g1333 9 22960400 22964051 PCT