Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr10g2013 ATGGAGAGTCCTCATTCTCTCTCTCCTTCTTCTTCGTCCTCTTCTTATTCTTCCGACGGCGTTAGCTTCGAAACGGAGGAGCCGAGGACGCCGTTGGCCGTGCGGCGAGCTTTGCAGCTGCTGAACTCCGGCGAGCCCGAGCTGCGGCTCCAAGCCGCCCGGGACATCCGGCGGCTCACGAAGACGTCACAGCGCTGTCGGCGCCAGCTCGCAGAAGCTGTCGGTCCACTCGTTTCCATGCTCCGAGTCGACTCGGCCGAGTCACACGAACACGCTCTACTCGCCTTGCTTAATCTCGCCGTCAAAGATGAAAAGAATAAAATCAATATTGTGGAGGCTGGTGCATTAGAACCGATAATCAGTTTCCTCAAGTCACAAAATCTAAATCTGCAGGAGTCTGCAACTGCATCTTTGCTCACACTATCTGCCTCTTCAACCAACAAACCAATTATTAGTGCTTGTGGTGCCATCCCTCTTCTGGTGGAGATCCTTCGAGATGGAAGCCCCCAAGCTAAAGCTGATGCAGTGATGGCTCTATCAAATTTATCGACACACCCTAATAATCTCAGCATAATTCTTGAGACAAATCCAATCCCTTTCATAGTTGATCTTCTTAAGACCTGTAAAAAATCCTCGAAAACAGCCGAAAAATGCTGTGCTTTGGTAGAGTCCTTGGTAGATTATGAGGAGGGCAGAACTGTGCTGACATCTGAAGAAGGTGGGATTCTTGCAGTTGTGGAAGTTCTTGAAAATGGCACTCTCCAAAGTAGGGAGCATGCGGTTGGAGCACTGTTGACAATGTGCCAAAGTGATCGATGTACATACAGGGAACCAATTCTTAAAGAAGGTGTCATTCCAGGACTTCTTGAGCTTACTGTTCAAGGAACACCCAAGTCTCAGTCAAAAGCACGCACTCTTCTGCAGTTACTGAGAGAATCTCCTTATCCAAGATCTGAAATTCAACCTGACACTCTTGAGAATATAGTATGCAACATCATATCCCAGATTGATGGGGATGATCAATCTGGTAAAGCAAAGAAGATGCTGGCTGAGATGGTCCAAGTCAGCATGGAACAGAGTCTCAGACATTTACAGCAAAGGGCTCTCGTGTGCACCCCAAGTGATCTGCCTATAGCTGGCTGTGCTTCTGAAGTTTCTTCAAAATGA 1167 0.4799 MESPHSLSPSSSSSSYSSDGVSFETEEPRTPLAVRRALQLLNSGEPELRLQAARDIRRLTKTSQRCRRQLAEAVGPLVSMLRVDSAESHEHALLALLNLAVKDEKNKINIVEAGALEPIISFLKSQNLNLQESATASLLTLSASSTNKPIISACGAIPLLVEILRDGSPQAKADAVMALSNLSTHPNNLSIILETNPIPFIVDLLKTCKKSSKTAEKCCALVESLVDYEEGRTVLTSEEGGILAVVEVLENGTLQSREHAVGALLTMCQSDRCTYREPILKEGVIPGLLELTVQGTPKSQSKARTLLQLLRESPYPRSEIQPDTLENIVCNIISQIDGDDQSGKAKKMLAEMVQVSMEQSLRHLQQRALVCTPSDLPIAGCASEVSSK* 389
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr10g2013 388 MobiDBLite consensus disorder prediction 1 24 - -
Apr10g2013 388 SUPERFAMILY ARM repeat 33 338 IPR016024 -
Apr10g2013 388 Gene3D - 11 371 IPR011989 -
Apr10g2013 388 PANTHER ARM REPEAT SUPERFAMILY PROTEIN 11 371 - -
Apr10g2013 388 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 155 197 IPR000225 GO:0005515
Apr10g2013 388 PANTHER U BOX DOMAIN-CONTAINING 11 371 - -
Apr10g2013 388 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 114 156 IPR000225 GO:0005515
Apr10g2013 388 SMART arm_5 63 101 IPR000225 GO:0005515
Apr10g2013 388 SMART arm_5 103 143 IPR000225 GO:0005515
Apr10g2013 388 SMART arm_5 144 184 IPR000225 GO:0005515
Apr10g2013 388 SMART arm_5 185 227 IPR000225 GO:0005515
Apr10g2013 388 Pfam Armadillo/beta-catenin-like repeat 147 183 IPR000225 GO:0005515
Apr10g2013 388 Pfam Armadillo/beta-catenin-like repeat 104 141 IPR000225 GO:0005515
Apr10g2013 388 MobiDBLite consensus disorder prediction 1 29 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr10g2013 Apr-Chr10 33008613 33012364 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr10g2013 34 311 U-box Gene Family AT2G23140 33.571 2.32e-39 146
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr10g2013 - - gmx:100809684 657.136
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr10g2013 10 33008613 33012364 Apr9g1324 9 22885278 22889259 PCT