Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr10g2012 ATGGCGCTGGCCAAAGACCAAAAAATTCCACATGATTCAAGCATGGGCAGCAAGTTTCAAACCTCCATGATTGTTCATAGGGTCAATGAAAACCACAAACCTGTGTTAGAAGAGGAAGATGGTTCACAGTGTACTAATGGGCTCAGCAATGATTCAGCAATAACTCATTCTCCTTCTCTATGTGGCAGTGGCAATGGTTATGTTTATAAGGGCACAAACTATCAGCTCGAAGAAGCAGAATCACTGATTAATTTCAAAGGGTACAGCAATCTAATGCAAGTTAGTGAATCTTTGCTTAGTTTTCAGCAGAACAAGCTGGTTCCCAACAACTGTTACTTGAAAGATAATAGTCAGAAAGAGTACTGTGTTTGGGAGAACAATTTTCATCAAGGACATAACCAATGGAATCAGATTAGTCCAAGAAGCACTACAACAGACTTGCGCCTGGTACAGGATTTTAATTGCTTTCAAACTGCTAGTGGATATAGCTCCATAGTCAATGATGCAAAAGAGAAGCAACATGGTCAAAGTTCATCTGGGTGGCTCTACTCATCACCAACTATCCCTGATGATAGCATCCATAAGTCAAGAGCACAAGAATCTGTCTTGAAAAAGCGCCCTTCTATGGGAGAAAACATGAAAGCTTCCAAGAAGCAATGCTCAACTGAGAGTAAAATGCCGAAACATAAGTCAAGCCCATCCAAGGATCCTCAAAGTGTGGCTGCCAAGAATAGAAGAGAGAGAATAAGTGAGCGGTTGAAAATACTACAAGAATTGGTGCCTAATGGCTCCAAGGTGGGTTTTTTTTTTGTTGATTTGGTAACCATGCTGGAGAAAGCAATTAGTTATGTGAAATTTCTTCAACTGCAAGTGAAGGTGTTGGCTACTGATGAATTTTGGCCTGTCCAAGGTGGAAAACCTCCTGATATTTCTCAGGTAAAAGAAGCAATCGATGCCATTCTTTCATCACAAAGAGATCAGAGAAGTTCAAGCTCAAAGTAG 1002 0.4062 MALAKDQKIPHDSSMGSKFQTSMIVHRVNENHKPVLEEEDGSQCTNGLSNDSAITHSPSLCGSGNGYVYKGTNYQLEEAESLINFKGYSNLMQVSESLLSFQQNKLVPNNCYLKDNSQKEYCVWENNFHQGHNQWNQISPRSTTTDLRLVQDFNCFQTASGYSSIVNDAKEKQHGQSSSGWLYSSPTIPDDSIHKSRAQESVLKKRPSMGENMKASKKQCSTESKMPKHKSSPSKDPQSVAAKNRRERISERLKILQELVPNGSKVGFFFVDLVTMLEKAISYVKFLQLQVKVLATDEFWPVQGGKPPDISQVKEAIDAILSSQRDQRSSSSK* 334
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr10g2012 333 CDD bHLH_AtIND_like 234 301 - -
Apr10g2012 333 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 6 324 - -
Apr10g2012 333 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 232 297 IPR036638 GO:0046983
Apr10g2012 333 Gene3D - 227 295 IPR036638 GO:0046983
Apr10g2012 333 MobiDBLite consensus disorder prediction 175 246 - -
Apr10g2012 333 MobiDBLite consensus disorder prediction 175 192 - -
Apr10g2012 333 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 6 324 - -
Apr10g2012 333 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 233 287 IPR011598 GO:0046983
Apr10g2012 333 Pfam Helix-loop-helix DNA-binding domain 243 288 IPR011598 GO:0046983
Apr10g2012 333 SMART finulus 239 293 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr10g2012 Apr-Chr10 32997600 32999040 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr10g2012 66 330 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G37800 48.339 4.60e-62 198
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Apr10g2012 HLH 5.8e-05 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr10g2012 - - gmx:100810010 520.005
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr10g2012 10 32997600 32999040 Apr9g1323 9 22873721 22875173 PCT