Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr10g2002 ATGAAGAGGGAACAGCAAGAAAGGTGTGGTGGAGGAGGAGGGTACGGCATGAAAGAAAGCTCGTCAATGTCGAGCGGCAAGGGGAAGAAGATGTGGGAGGAAGAGCAACAGGGAGGGAATGACGAGTTGCTGGCGGCGTTGGGGTACAAGGTGCGTTCTTCGGACATGGCTGACGTGGCACAGAAGCTTGAGCTGTTGGATATGGTGATGGGCAGTGCTCAGGAAGAGGGAATTTCGCACCTGGCTTCTGACACCGTTCACTACGACCCAGCGGATCTATCTTCATGGGTGCAAAGCATGCTCAACGAACTCAACCCTGATCCATCATCATCCATCCTCGATCCATCTTCTCTCTTGGAAACCCCCCAAATCGATAACCCCTTACACCACCCTTCTTCCATCCTCAACGACGACTCTGAATACGACCTCAGAGCCATTCCCGGAATAGCCGCATACCCTCCACAAAACAACCACACCAAAACCGAAACCGAAACCGAAACAGGTAACAAGCGGTTCAAGGCGTCGCCAATTGAGTCACCAGAGTCCGTGCCACCGGCGGGGACTTTATCAGAGTCAACAAGACCCGTTGTTCTGGTTGACTCCCAGGTAACGGGGGTTCGTCTCGTTCACACTATCTTGGCCTGCGCTGAAGCCGTTCAGCAAGAGAATCTCAAGCTCGCCGACACGCTCGTCAAGCACATAGGTCTTCTCGCGGCTTCGCAAGCAGGAGCCATGAGAAAAGTGGCTTCGTATTTCGCGCAAGCCTTGGCGCGCCGAATCTACGGAATATTCCCGGAGGAAACCCTCGATTCCCCTTTCTCCGATATGTTGCACATGCACTTCTACGAGTCCTGTCCCTATCTGAAATTCGCGCACTTCACCGCCAACCAGGCCATTCTCGAGGCCTTTGCCACCGCCGGGAGGGTCCACGTCATCGATTTTGGACTCAAACAGGGGATGCAGTGGCCGGCGCTCATGCAGGCCCTCGCATTGCGTCCCGGTGGCCCTCCTACTTTCCGGTTAACCGGAATCGGTCCTCCTCAGCCGGATAACACCGACTCGCTTCAGCAAGTGGGCTGGAAGCTGGCCGAGTTGGCCCAAACCATTGGCGTTCAGTTCGAGTTTCGCGGATTCGTTTGCAACAGTTTGGCGGATCTTGACCCGACCATGCTCGAGGTCCGACCCGGTGAAGCCGTCGCTGTAAACTCTGTTTTTGAGCTTCACCGCATGTTGGCCCGACCCGGTTCCATAGAAAAAGTGTTGAACACTGTGAAGAAAATTAAGCCCAAGATTGTGATCATTGTGGAGCAAGAAGCGAACCATAATGGACCGGTTTTTCAGGACCGGTTCACGGAGGCCCTGCATTACTACTCGAGTTTGTTTGACTCGCTGGAGGGATCGTCCTCTTCGACCGGGTTGGGTTCACCGAGTCAGGACCTGTTGATGTCGGAGCTTTACCTGGGGAGACAAATATGCAACATAGTGGCGTGTGAAGGGGTGGACCGGGTCGAGCGCCACGAGCCTCTGACTCAGTGGAGGGGGAGAATGGGCTCGGCCGGATTCGACCCGGTTCATCTCGGGTCTAATGCTTTCAAACAAGCTAGCATGTTGTTGGCTCTTTTCGCCGGCGGTGATGGCTATAGGGTGGAGGAGAATAATGGGTGTCTCATGCTTGGGTGGCACACGAGGCCACTCATCGCAACCTCCGCGTGGAAGCTTCCCGCCGGTGAGTCTTAG 1737 0.5509 MKREQQERCGGGGGYGMKESSSMSSGKGKKMWEEEQQGGNDELLAALGYKVRSSDMADVAQKLELLDMVMGSAQEEGISHLASDTVHYDPADLSSWVQSMLNELNPDPSSSILDPSSLLETPQIDNPLHHPSSILNDDSEYDLRAIPGIAAYPPQNNHTKTETETETGNKRFKASPIESPESVPPAGTLSESTRPVVLVDSQVTGVRLVHTILACAEAVQQENLKLADTLVKHIGLLAASQAGAMRKVASYFAQALARRIYGIFPEETLDSPFSDMLHMHFYESCPYLKFAHFTANQAILEAFATAGRVHVIDFGLKQGMQWPALMQALALRPGGPPTFRLTGIGPPQPDNTDSLQQVGWKLAELAQTIGVQFEFRGFVCNSLADLDPTMLEVRPGEAVAVNSVFELHRMLARPGSIEKVLNTVKKIKPKIVIIVEQEANHNGPVFQDRFTEALHYYSSLFDSLEGSSSSTGLGSPSQDLLMSELYLGRQICNIVACEGVDRVERHEPLTQWRGRMGSAGFDPVHLGSNAFKQASMLLALFAGGDGYRVEENNGCLMLGWHTRPLIATSAWKLPAGES* 579
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr10g2002 578 Pfam Transcriptional regulator DELLA protein N terminal 41 108 IPR021914 -
Apr10g2002 578 Gene3D - 39 104 IPR038088 -
Apr10g2002 578 PANTHER DELLA PROTEIN RGL1 35 572 IPR030006 GO:0003712|GO:0005634
Apr10g2002 578 MobiDBLite consensus disorder prediction 107 136 - -
Apr10g2002 578 MobiDBLite consensus disorder prediction 1 37 - -
Apr10g2002 578 SMART DELLA_2 41 114 - -
Apr10g2002 578 Pfam GRAS domain family 208 572 IPR005202 -
Apr10g2002 578 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 35 572 IPR005202 -
Apr10g2002 578 MobiDBLite consensus disorder prediction 150 190 - -
Apr10g2002 578 MobiDBLite consensus disorder prediction 107 133 - -
Apr10g2002 578 ProSiteProfiles GRAS family profile. 199 572 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr10g2002 Apr-Chr10 32914365 32916496 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr10g2002 1 573 GRAS Transcription Factor Family AT2G01570 60.500 0.0 690
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Apr10g2002 GRAS 9.4e-138 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr10g2002 K14494 - gmx:100799695 867.455