Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr10g1997 ATGGCCTCGTCCTTGGATATGTCACTTGATGATAGAATAAAGAACAGGAGTAACAGAGGGAGAGGTAGAGGGGGCCTTGGCAGAGCCCGTTCTGGCCGTGGACCAAGCGGGACTCTTAGTGGTGGAAGAATGACTGGTGCTGTTAATAGTAGAAGAGTGCCTGGTGCTGGTAATGGTGGAAGAGCAACTGGTGCTGTTCGTAGAGGTCCTCTTATGGTTAACACTCGACCATCGTCTTATGCTATTGCCAAGTCTATTCGCAGAGCTAGGCCTTTTCCATGGCAGCATGATTTGTTTGAAGATAGCCTAAGAGCTGCAGGGATTCAAGGAATAGAAGTCGGCACGAAGTTGTATGTTTCGAATTTGGACTATGGAGTGACCAATGAAGATATAAGGGAACTATTCTCTGAACTTGGAGCCTTGAAGCACTTTGCTGTTCATTATGACAAAAATGGACGTTCAAGTGGTTCAGCTGAAGTTGTTTATACCAGGAGAAGTGACGCATTTGCTGCTCTTAAGCGATATAATAATGTACTTTTGGATGGAAAGCCCATGAAGATTGAGATTGTAGGTTCCAATGCGGAATTGCCTATAACTGCACGAGTGAATGTCACTGGGGTGAATGGACGGAGGAAGAGGACTGTTGTCATGACGCCTAGAGGTGGTCAAGCTGGAGGTGCTGCTATAACTAATCGTGGTGCTGGCTGGGCACGTCGCGGTGGTTCAAGGAGTGGCAGTGGACGTGGTCGGGGCCGTGGTCGGGCTAGGGGTGGAGGTGCCCGGGGTGGAGGTCGAGGTCGTGGAAGTGGAAGAAAGGATGCTGTTGAGAAGTCAGCAGAGGAACTTGACAAGGAACTGGAAACCTATCACGCTGAAGCCATGCACATCTCATGA 894 0.4922 MASSLDMSLDDRIKNRSNRGRGRGGLGRARSGRGPSGTLSGGRMTGAVNSRRVPGAGNGGRATGAVRRGPLMVNTRPSSYAIAKSIRRARPFPWQHDLFEDSLRAAGIQGIEVGTKLYVSNLDYGVTNEDIRELFSELGALKHFAVHYDKNGRSSGSAEVVYTRRSDAFAALKRYNNVLLDGKPMKIEIVGSNAELPITARVNVTGVNGRRKRTVVMTPRGGQAGGAAITNRGAGWARRGGSRSGSGRGRGRGRARGGGARGGGRGRGSGRKDAVEKSAEELDKELETYHAEAMHIS* 298
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr10g1997 297 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 117 185 IPR000504 GO:0003723
Apr10g1997 297 PANTHER THO COMPLEX SUBUNIT 4C 1 296 - -
Apr10g1997 297 PANTHER RNA AND EXPORT FACTOR BINDING PROTEIN 1 296 - -
Apr10g1997 297 MobiDBLite consensus disorder prediction 266 282 - -
Apr10g1997 297 Gene3D - 111 191 IPR012677 -
Apr10g1997 297 SUPERFAMILY RNA-binding domain, RBD 15 189 IPR035979 GO:0003676
Apr10g1997 297 SMART rrm1_1 116 188 IPR000504 GO:0003723
Apr10g1997 297 Coils Coil 272 292 - -
Apr10g1997 297 MobiDBLite consensus disorder prediction 219 282 - -
Apr10g1997 297 CDD RRM_THOC4 115 189 - -
Apr10g1997 297 SMART FoP_duplication_2 226 297 IPR025715 -
Apr10g1997 297 Pfam C-terminal duplication domain of Friend of PRMT1 235 291 IPR025715 -
Apr10g1997 297 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 115 192 IPR000504 GO:0003723
Apr10g1997 297 MobiDBLite consensus disorder prediction 1 66 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr10g1997 Apr-Chr10 32879724 32885305 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr10g1997 114 189 Eukaryotic Initiation Factors Gene Family AT2G23350 39.474 6.96e-10 57.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr10g1997 K12881 - gmx:100801491 441.81
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr10g1997 10 32879724 32885305 Apr10g1997 10 32879724 32885305 ECH