Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr10g1995 ATGGGAAGGCAACCTTGCTGTGACAAAGTTGGGTTGAAGAAGGGGCCATGGACTGCTGAGGAGGACAAGAAACTCATCAACTTTATCCTCACTAATGGCCAATGCTGTTGGAGAGCTGTTCCTAAGCTAGCAGGGTTGTTAAGGTGTGGGAAAAGTTGCAGGCTGAGATGGACAAACTACTTGAGACCAGACCTAAAGAGAGGTCTTCTATCAGAATATGAAGAGAAAATGGTCATTGATCTTCATGCTCAACTTGGCAATAGATGGTCTAAGATTGCTTCTCATCTCCCTGGAAGAACTGATAATGAGATAAAAAACCACTGGAATACCCACATAAAGAAGAAGCTAAAGAAAATGGGAATTGACCCTGTTACTCACAAGTCACTCTCTAATACAACTGAGCAAACTCAAGCCCAACAACCAGAACAACACCACCATCAACAATCGCAAGAACAGCATCAACCACAATCTTTGCAAGCTGAGCTTGAACCCAAATTTGAGCCTAAAATTGACCAAAATAAAGAGTCAGAGAAGCCTGAAACTTCATTTGAATCATCAACCATCACTGAAGCTAAGGAGGAAGACCAAATTATGACACCCTTATTTGACTCGATCGAACTAATGAATGGGTTCTGCACAGATGAAGTTCCAATAATTGAACCCAATGAGATTATAATTCCCTGTGCTCCTTCCACTTCATCAGCCACTACATCATCATCATCTTCTTCTTCAAATTCATCAAACTTCCTTGAAGATTTGCTGCTCCCAGATTTTGAGTGGTCTGATAATTACAATGATAATAATATTGACAATAACAATGAAACCAGCAATAGCAGCATGGCCTTGTGGGATGATGATTTCATTAGAAGTTGGAATTTGCTTATTAATGATGATGATGATTGTGACAGAAAGCAAGTATTTGACGCTCCTCTTAATCAGCACCCAAGAATGATCATGGATTCAGAATCTTGGGCCTATGGCTTGTTTTGA 990 0.403 MGRQPCCDKVGLKKGPWTAEEDKKLINFILTNGQCCWRAVPKLAGLLRCGKSCRLRWTNYLRPDLKRGLLSEYEEKMVIDLHAQLGNRWSKIASHLPGRTDNEIKNHWNTHIKKKLKKMGIDPVTHKSLSNTTEQTQAQQPEQHHHQQSQEQHQPQSLQAELEPKFEPKIDQNKESEKPETSFESSTITEAKEEDQIMTPLFDSIELMNGFCTDEVPIIEPNEIIIPCAPSTSSATTSSSSSSSNSSNFLEDLLLPDFEWSDNYNDNNIDNNNETSNSSMALWDDDFIRSWNLLINDDDDCDRKQVFDAPLNQHPRMIMDSESWAYGLF* 330
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr10g1995 329 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Apr10g1995 329 SMART sant 66 114 IPR001005 -
Apr10g1995 329 SMART sant 13 63 IPR001005 -
Apr10g1995 329 CDD SANT 16 61 IPR001005 -
Apr10g1995 329 MobiDBLite consensus disorder prediction 164 195 - -
Apr10g1995 329 PANTHER MYB TRANSCRIPTION FACTOR 1 302 - -
Apr10g1995 329 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Apr10g1995 329 Gene3D - 11 67 - -
Apr10g1995 329 MobiDBLite consensus disorder prediction 130 195 - -
Apr10g1995 329 CDD SANT 74 112 IPR001005 -
Apr10g1995 329 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Apr10g1995 329 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Apr10g1995 329 PANTHER TRANSCRIPTION FACTOR MYB51-LIKE ISOFORM X1 1 302 - -
Apr10g1995 329 Gene3D - 71 116 - -
Apr10g1995 329 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Apr10g1995 329 MobiDBLite consensus disorder prediction 130 159 - -
Apr10g1995 329 Pfam Myb-like DNA-binding domain 71 111 IPR001005 -
Apr10g1995 329 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr10g1995 Apr-Chr10 32855443 32857867 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr10g1995 1 329 MYB Transcription Factor Family AT5G16600 46.240 8.17e-101 298
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Apr10g1995 Myb_DNA-binding 9.6e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr10g1995 K09422 - gmx:100803624 502.671