Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr10g1984 ATGACTAGAAAGAAGGTGAAACTTGCATTCATAGCCAATGACTCTGCAAGGAAGGCAACATTCAAGAAAAGGAAGAAGGGTCTAATGAAGAAGGTTAGTGAGCTTAGCACCCTTTGTGGGATTGATGCTTGTGCTATAGTTTATAGTCCTTATGATCCTCAACCAGAGGTTTGGCCATCTCCAATGGGCGTTCAAAGGGTGCTTGCCAAGTTCAGGAGAATGCCTGAATTGGAACAGAGCAAGAAGATGGTGAACCAAGAGAGTTTTCTGAGGCAAAGGATCCTAAAGGCCAAAGAGCAATTGAAGAAACAAAGGAAGGATAATAGGGAAAAGGAGATGACTCAACTCATGTTTCAGTACCTTAGTGCAGGTAAAATTATGCACAATATAAGCATGGTTGATTTGAATGATTTGGCATGGTTGATTGATCAGAACTTGAAGGACATCAACAGAAGAATTGAAGTGTTGACTAAGAATGCTCAAAGTCAAGTCCAAATGCCCCCACCAATGGTGACTGATGGAGTAGCCAAGATTGAAGATAAGGCACAAGGGAGTCATGGCCAGGGGTTTGATATGAACATGGATCTCATGCAGAAGCAGAACTGGTTTATCAATTTGATGAATAGTGGTGGTGGGAATGATGCAGTATCTTTTGGAGATGTTAATCATCAAGGCTTTTGGACTAACCCATTTTTCCATTGA 702 0.4145 MTRKKVKLAFIANDSARKATFKKRKKGLMKKVSELSTLCGIDACAIVYSPYDPQPEVWPSPMGVQRVLAKFRRMPELEQSKKMVNQESFLRQRILKAKEQLKKQRKDNREKEMTQLMFQYLSAGKIMHNISMVDLNDLAWLIDQNLKDINRRIEVLTKNAQSQVQMPPPMVTDGVAKIEDKAQGSHGQGFDMNMDLMQKQNWFINLMNSGGGNDAVSFGDVNHQGFWTNPFFH* 234
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr10g1984 233 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL80 1 215 - -
Apr10g1984 233 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 51 IPR002100 GO:0003677|GO:0046983
Apr10g1984 233 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Apr10g1984 233 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 215 - -
Apr10g1984 233 Gene3D - 13 118 IPR036879 GO:0003677|GO:0046983
Apr10g1984 233 CDD MADS_SRF_like 2 85 IPR033897 GO:0000981|GO:0000987|GO:0045944
Apr10g1984 233 Coils Coil 87 114 - -
Apr10g1984 233 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Apr10g1984 233 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Apr10g1984 233 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Apr10g1984 233 SUPERFAMILY SRF-like 2 95 IPR036879 GO:0003677|GO:0046983
Apr10g1984 233 ProSiteProfiles MADS-box domain profile. 1 49 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr10g1984 Apr-Chr10 32737867 32738568 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr10g1984 1 164 Type I MADS-box Gene Family AT5G48670 66.463 6.78e-69 213
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Apr10g1984 SRF-TF 3.8e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr10g1984 - - gmx:100813231 412.92