Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr10g1983 ATGGTTTTGTCTTGGAGCAGAAGAAACGTTTTCCGCCGTGCCCATAAGGGGAAAGATCACGTTAAAGGCGGTGAATTGGAGGTGGAGATTGTGATCCCTACCCATTTCAAGTGCCCTGTGAGTTTGGACTTGATGAAAGATCCCGTGACTTTATCAACTGGCATAACCTACGACAGGGTCAGCATTGAGAAGTGGATTGAAGCAGGGAACACAACATGTCCTGTTACCAATCTGGTTCTCACAAGTTTTGACATCATCCCCAACCATGCTATTCGGAGAATGATTCAAGATTGGTGTGTGGAAAACAGTTCTTATGGGATTGAAAGGATCCCAACACCTAGGATACCTGTGTCAAGTTACGAGGTTTCTGAGACATTTACGAGGATCTTGTCTGCTTCTCAGCGTGGTGATGACAACAAGTGTCAGGAACTGGTTGGGAAGATTAAGGTTTGGGGGAGAGAGAGTGAGAGGAACAAAAAGTGCATAGTGGGAAATGGGGTTGGTGCTGTTCTTGCTCATGCTTTTGATTCATTTTCAAGTGCTTCTATTGATAAGCACGTGGTTGTTTTGGAGGAGATTTTGGAGGTGCTGACGTGGATGATCCCATTTGGTGAAGAGGGTCGACGTAAATTGGGATCATTAGCTTCTTTGAATTCCATGGTTTGGTTTCTAGAGGGTAAAGATCTTGCAGCAAGACAAAATGCTGCTTTGTTGCTTAAGGAAGTGTCTGTTCATGATTTGGCCAAAGCTGGAGGAGTTGTTGAAGCTTTGGTTAAGATGGTTAGGGAGCCTATTGGGACTATTGCTACGAAGGCTTGTTTGGTAACCATTTTTAACTTGGTTTCCTCAGCGGAGAATAAGGAGGTAATTGCACAAAGGTTTGTGCAATTGGGTTTGGTTTCACTGCTTCTAGAGGCAATTGTTGAAGGAGAGAAAGGGGTATGTGAGAAGGCACTAGGGGTATTGGATTGCATTTGTGATTGCCAAAAAGGGAAGGAGGTTGTGCAAAGTAATGCTTTAACTTTGCCTCTTGTTATTAAGAAGATTTTGAGGGTGTCACAGTTGGCTTCAAGTTTTGCTGTCTCCATTCTTAGGAAGATTTGTGAGAAGAGGGAGGAAGGGGTTCTGATTGAGGCACTTCAAGTTGGGGCTTTTCAGAAACTCTTGGTTATGCTGCAGGTTGGTTGCGATGAGAGAACAAAGGAGAATGCTACCGAGTTGTTGAAACTGTTGAATGGTTACAGGAACAAAGTAGAGTGCTTTGACTCATCATTGGAGTTCAAGCATCTAAAGAAGCCCTTCTGA 1305 0.4383 MVLSWSRRNVFRRAHKGKDHVKGGELEVEIVIPTHFKCPVSLDLMKDPVTLSTGITYDRVSIEKWIEAGNTTCPVTNLVLTSFDIIPNHAIRRMIQDWCVENSSYGIERIPTPRIPVSSYEVSETFTRILSASQRGDDNKCQELVGKIKVWGRESERNKKCIVGNGVGAVLAHAFDSFSSASIDKHVVVLEEILEVLTWMIPFGEEGRRKLGSLASLNSMVWFLEGKDLAARQNAALLLKEVSVHDLAKAGGVVEALVKMVREPIGTIATKACLVTIFNLVSSAENKEVIAQRFVQLGLVSLLLEAIVEGEKGVCEKALGVLDCICDCQKGKEVVQSNALTLPLVIKKILRVSQLASSFAVSILRKICEKREEGVLIEALQVGAFQKLLVMLQVGCDERTKENATELLKLLNGYRNKVECFDSSLEFKHLKKPF* 435
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr10g1983 434 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 21 6 434 - -
Apr10g1983 434 SUPERFAMILY ARM repeat 137 411 IPR016024 -
Apr10g1983 434 SMART Ubox_2 35 98 IPR003613 GO:0004842|GO:0016567
Apr10g1983 434 CDD RING-Ubox_PUB 36 77 IPR045210 -
Apr10g1983 434 Pfam U-box domain 32 103 IPR003613 GO:0004842|GO:0016567
Apr10g1983 434 PANTHER WDSAM1 PROTEIN 6 434 IPR045185 GO:0061630
Apr10g1983 434 SUPERFAMILY RING/U-box 27 108 - -
Apr10g1983 434 ProSiteProfiles U-box domain profile. 31 105 IPR003613 GO:0004842|GO:0016567
Apr10g1983 434 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 12 109 IPR013083 -
Apr10g1983 434 Gene3D - 120 413 IPR011989 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr10g1983 Apr-Chr10 32735888 32737454 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr10g1983 24 434 U-box Gene Family AT5G37490 50.000 2.88e-135 394
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr10g1983 - - gmx:548086 702.205
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr10g1983 10 32735888 32737454 Apr9g1289 9 22542606 22544433 PCT