Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr10g1982 ATGAAACAGGACATTGATCTTGAAGTGGAAGCCTCAGCAGAATATGAATCTGAAGCTAGCAGCCAGGTTGCTTCCAATATATTTATTCAAGAAACCTCTGCAGGTCCTTGTAGCGACAGCCTCACTAACTCTTCCACTGTCACAAATCCAACAGACCTTCATCCTCATTCAGATGCTATCTCACTTGACTTAACTCTTAACTTCAACAACAAAGACTTAGTGGTTAGAGATTCCACAGGACTCTCATTCTCAAGCACTAGTGAGAGCAGCAATGAGCCTCCCTCTCAAACTACTTCAGCAACCAACCCAAGAGTTTTCTCTTGCAATTACTGTAAGCGAAAATTTTTTAGCTCACAGGCACTTGGTGGCCACCAAAATGCACACAAAAGAGAAAGAACATTAGCAAAGCGCGCAATGAGGATGGGATTTTTCTCTGAGAGGTATGCAAGTCTTGCATCTCTCCCTCTTCATGGTTCTTTCAGGTCTTTAGGGATAAAGGCACACTCTTCACTGCACCACGGTTTTTCATCACCAATGAGGTCTCCTGAAGTGAAAAGTAATGCAAGATTTGAGCAAGGATATATCGGTCTTCCGATATTCTTGGAGGATGATGAGCCAGAACTGTTGTGGCAAGGTAGTTTCCGCCAGGTTACTACTGAGGGAACTCATAGTCATCAGAATTTCATACTGAGTGGAAGTTCAAATATGAGTTTTACTGGGGTGAATCCACCACTTGACGCAGAGAATTCAACACCTGAGTTAACGTTGAAACTTTGA 777 0.4286 MKQDIDLEVEASAEYESEASSQVASNIFIQETSAGPCSDSLTNSSTVTNPTDLHPHSDAISLDLTLNFNNKDLVVRDSTGLSFSSTSESSNEPPSQTTSATNPRVFSCNYCKRKFFSSQALGGHQNAHKRERTLAKRAMRMGFFSERYASLASLPLHGSFRSLGIKAHSSLHHGFSSPMRSPEVKSNARFEQGYIGLPIFLEDDEPELLWQGSFRQVTTEGTHSHQNFILSGSSNMSFTGVNPPLDAENSTPELTLKL* 259
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr10g1982 258 ProSiteProfiles Zinc finger C2H2 type domain profile. 106 133 IPR013087 -
Apr10g1982 258 PANTHER ZINC FINGER PROTEIN 3-RELATED 1 258 - -
Apr10g1982 258 Gene3D Classic Zinc Finger 84 151 - -
Apr10g1982 258 MobiDBLite consensus disorder prediction 81 102 - -
Apr10g1982 258 SUPERFAMILY beta-beta-alpha zinc fingers 101 133 IPR036236 -
Apr10g1982 258 ProSitePatterns Zinc finger C2H2 type domain signature. 108 128 IPR013087 -
Apr10g1982 258 PANTHER ZINC FINGER PROTEIN JAGGED 1 258 IPR045320 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr10g1982 Apr-Chr10 32723170 32724189 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr10g1982 1 258 C2H2 Transcription Factor Family AT1G66140 46.127 5.18e-49 160
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Apr10g1982 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr10g1982 - - gmx:100794851 384.8