Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr10g1976 ATGCCCTTGGAAGGGATTTTCATTGAACCACCCACCTCAACTTCTACTACTCCTGATCTCTCTCTTCACATAAGCCCACCAAGCACTTCCTCTTCTTTGATTTGCAACAATAACAACACATCTGGTGGCACCAATTATGAAGCACACAATTCTACAAGTACAAATTTTGCTTCTCAAGCTCATACTGAGCTCTCTTTGGGGAGGAATTTCAGTGGTGGAGGTGGAAGAGGAGCGCCTAATGAGGAACCACCACCATACAATAACCCTTATTATCAAGCCCAACAGGCCCATTTCCATAATCTTCACCACCATTCTAGCACTAGTAATGCTTCAACGTCAACAGCTAGCACTACCAGTAATTCCTCCACTCACATGAATCACATAAATTATGGGGTTTCTTTGCTTGATGTGTCATCAGAAGGATTGAGGCCAATCAAGGGGATTCCAGTGTATCACAACCGTTCATTCCCTTTCTTGCCGATGGAACATTCAAGAGACAAGGATCATCATGCCAAGATGTGTTTATATCATCACATGCCATCATATCCCTCTTTTTCCTCTTCCCTTTGTTCTTCTTCTCCTTCTTCTTCTCCTGCACCCTACTTCGCTGCCGCCGCGGTAGGAGGCTTGGATCCCATGTCCTTTTTGAACACGGGCGGATCTGCCGCGGCGGCGGCAGGTTATAGGGCGGCGACGGCAGCAAGGTTTAATGGAATTCCGGGGGAGGTTTTCAAATCTCATCATCCATTGCACCATCATCATTCATCACAATCACACTATGGGGTTGGACTTGGACCCTCTCATGAGGCCTCTTCAGGGTTGATGAGATCAAGGTTTTTGCCAAAGTTGCCAACCAAAAGGAGCATGAGAGCACCAAGAATGCGGTGGACAAGTACACTCCATGCTCGATTTGTTCATGCTGTTGAGCTTCTGGGTGGCCATGAAAGAGCTACGCCAAAGTCAGTTCTTGAGCTCATGGATGTGAAGGATCTCACATTAGCTCATGTCAAAAGCCATTTGCAGATGTATCGAACTGTTAAGACCACTGACAAGCCTGCTGCTTCTTCAGGCCTTTCAGATGGATCCGGAGAAGATGACATGTCTCCAATGGGAAGCAGTGGTGGAATGCGTCAATTTTCAGATCAAAGAGGCCTTTCGGATCGACCAATGCAACAAGATATGGACTACTCTTCGACCACCACGCTATGGAGTAATTCTTCAAGTAGAGAACCATGGCCACAAGCTAGTTCTAATGACATAGATGGTTTCAGACCACCTGTCTTCCAGTCACAACCAATATCAGGAGGGCATCAAATTCAGGAGTGTGATTCAACTCAACTCAAGAAAAGTTTGTCAGGATCAAGTTTAGAGTGCAAGAACCCAAGCTTGGAATTCACATTAGGCAGACCGGATTGGAATGGCAAAGGACAAGCCTAA 1437 0.4614 MPLEGIFIEPPTSTSTTPDLSLHISPPSTSSSLICNNNNTSGGTNYEAHNSTSTNFASQAHTELSLGRNFSGGGGRGAPNEEPPPYNNPYYQAQQAHFHNLHHHSSTSNASTSTASTTSNSSTHMNHINYGVSLLDVSSEGLRPIKGIPVYHNRSFPFLPMEHSRDKDHHAKMCLYHHMPSYPSFSSSLCSSSPSSSPAPYFAAAAVGGLDPMSFLNTGGSAAAAAGYRAATAARFNGIPGEVFKSHHPLHHHHSSQSHYGVGLGPSHEASSGLMRSRFLPKLPTKRSMRAPRMRWTSTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYRTVKTTDKPAASSGLSDGSGEDDMSPMGSSGGMRQFSDQRGLSDRPMQQDMDYSSTTTLWSNSSSREPWPQASSNDIDGFRPPVFQSQPISGGHQIQECDSTQLKKSLSGSSLECKNPSLEFTLGRPDWNGKGQA* 479
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr10g1976 478 MobiDBLite consensus disorder prediction 248 271 - -
Apr10g1976 478 MobiDBLite consensus disorder prediction 9 38 - -
Apr10g1976 478 MobiDBLite consensus disorder prediction 347 438 - -
Apr10g1976 478 MobiDBLite consensus disorder prediction 65 90 - -
Apr10g1976 478 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 292 345 IPR006447 GO:0003677
Apr10g1976 478 MobiDBLite consensus disorder prediction 373 415 - -
Apr10g1976 478 MobiDBLite consensus disorder prediction 1 38 - -
Apr10g1976 478 MobiDBLite consensus disorder prediction 102 122 - -
Apr10g1976 478 PANTHER TRANSCRIPTION FACTOR MYB-HB-LIKE FAMILY-RELATED 1 478 - -
Apr10g1976 478 PANTHER TRANSCRIPTION FACTOR KAN2-RELATED 1 478 IPR044847 GO:0000976|GO:0006355|GO:0010158
Apr10g1976 478 SUPERFAMILY Homeodomain-like 289 345 IPR009057 -
Apr10g1976 478 Gene3D - 291 348 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr10g1976 Apr-Chr10 32687205 32693197 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr10g1976 1 475 G2-like Transcription Factor Family AT5G16560 38.264 1.76e-79 251
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Apr10g1976 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr10g1976 - - ccaj:109796302 662.914