Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr10g1972 ATGCCCCTTCATCACAATTCAGCAATGTCACAACTTTCAATTCCCAATAACGTACTCTTCTTCATCTTTCTAAGTTTTTTCAATGTATATTCAATCTTCTTCATCTTCGCCACCGCCACCACCCAATTCGACTTTGGAACCTTAACATTGAGCACTCTCAAGCTTCTCGGCGATGCCCATCTCAACAATAACACCGTCAGCCTCACCGGCGACCCCGCCGTCCCCAACTCTGCCGCCGGCAGAGCCCTTTACGCCACCCCCATTAGATTCCGCCAAGCGGGAAACCCTTTTCCGGTGACTTTCGCCACCTTCTTCTCCTTCTCCGTCACCAACCTCAACCCCTCCTCCGTCGGCGGCGGCCTCGCCTTTGTCATCTCGCCGGACGACACCGTTGTCGGGAACCCTGGCGGCTACCTTGGCCTTGAGACCTCCGCCGGCGCCGGCGGAGGTTTCCTCGCCGTGGAATTTGACACCCTAATGGACGTGGAATTCAACGACATTAACGGAAACCATGTTGGGTTGGACCTAAACAGCGTCGTTTCGAACCAAGTTAGCGACTTGGGAACCATCGGAATTGATCTGAAAAGCGGTGACTCGGTGAGCGCGTGGATCGAATACGATGGGAACAGCAAAGGGTTGCGCGTGTGGGTCTCATACTCGAATGTGAAACCCAAAGATCCGATTTTGAGGGTGGATCTTGATGTTGGTATGTACGTTAATGATTTCATGTATGTGGGGTTTTCTGGGTCTACCCAAGGTAGTACAGAGGTTCACAGTGTTGAATGGTGGAGTTTTAACTCCTCGTTTGATTCCACGGCGGCGCCGTCACCTCCTGCCGCCTCGTCAGCACCGTCTTTGGCTCCTTCTGTTGAGCAAAAGGAGAGTAAGTCATCATGCCACAGTGGGTTGTGCAAGCAAGGTGTGGGAGCAGTTGCTGGGGTTGTAACTGCTGGTGCTTTCGTTCTTGCTCTCTTTGCTGGTGCATTGTTTTGGGTGTATTCTAAGAATGTGAAGCATGTGAAGAAGTTTGATTCAATTGAGTCTGAGATCATTAGAATGCCTAAAGAGTTTAGCTACAAGGAGCTTAAGGTGGCCACTAAATGCTTCAGTGCAAATAGGGTCATTGGTCATGGTGCTTTTGGGACTGTTTATAAGGGTGTTTTGAAAGATAGTGGTGACATTGTTGCTGTCAAGAGGTGTAACCACAGTGGTCAAGGTAAGAATGAGTTTTTGTCTGAATTGTCCATAATTGGGAGTCTTAGGCATCGCAACTTGGTTCACCTTCAAGGCTGGTGCCATCAGAAAGGTGAAATTTTGTTGGTGTATGATTTGATGCCCAATGGGAGTCTAGATAAGGCTTTGTATGAGGCTAGAATACCTTTATCTTGGCCTCACAGGCTCAAAATTTTGCTAGGTGTGTCATCTGTTTTGGCCTACTTGCATCATGAGTGTGAAAACCAAGTAATTCACAGGGACATTAAGACTAGTAACATAATGTTAGATGAAGGGTTCAATGCCCGGTTAGGTGATTTCGGTTTAGCAAGGCAGACGGAGCATGACAAGTCTCCTGATGCTACCGTGGCCGCCGGGACAATGGGATACCTTGCGCCTGAGTATGTCCTTACAGGTAAAGCCACTGAGAAAACTGATGTATTTAGTTATGGTGCTGTGGCTCTTGAGGTGGCTAGTGGAAGAAGACCTATTGAAAAAGATGCTAATGGGGCTGGTAAAGTTGGTATTAGCAGCAATTTGGTAGAATGGATTTGGAGTTTGCATCAGGAAGGTAAGTTGCTAACCGCTGCTGATCCGAGGCTTGAAGGCGACTTTGAGGAAGGGGAGATGAGGAGAGTACTCTTGGTTGGGCTAGCTTGCTCACACCCTGATTCAATGGCAAGACCTACTATGAGGTGTGTAGTTCAGATGCTGCTTGGTGAGGCTGAAGTGCCCATCGTCCCTAGAACCAAGCCTTCTACTAGCTATAGTACTTCCCACCTCTTAATGAGCTTGCAAGATAGTGAATCTGACTGTAATGATGCTGTGATCACCATCTCCTCCTCCTCATCATCAGAGAACAGCTTCAATGATAGAGATTTAGTGTGA 2100 0.4814 MPLHHNSAMSQLSIPNNVLFFIFLSFFNVYSIFFIFATATTQFDFGTLTLSTLKLLGDAHLNNNTVSLTGDPAVPNSAAGRALYATPIRFRQAGNPFPVTFATFFSFSVTNLNPSSVGGGLAFVISPDDTVVGNPGGYLGLETSAGAGGGFLAVEFDTLMDVEFNDINGNHVGLDLNSVVSNQVSDLGTIGIDLKSGDSVSAWIEYDGNSKGLRVWVSYSNVKPKDPILRVDLDVGMYVNDFMYVGFSGSTQGSTEVHSVEWWSFNSSFDSTAAPSPPAASSAPSLAPSVEQKESKSSCHSGLCKQGVGAVAGVVTAGAFVLALFAGALFWVYSKNVKHVKKFDSIESEIIRMPKEFSYKELKVATKCFSANRVIGHGAFGTVYKGVLKDSGDIVAVKRCNHSGQGKNEFLSELSIIGSLRHRNLVHLQGWCHQKGEILLVYDLMPNGSLDKALYEARIPLSWPHRLKILLGVSSVLAYLHHECENQVIHRDIKTSNIMLDEGFNARLGDFGLARQTEHDKSPDATVAAGTMGYLAPEYVLTGKATEKTDVFSYGAVALEVASGRRPIEKDANGAGKVGISSNLVEWIWSLHQEGKLLTAADPRLEGDFEEGEMRRVLLVGLACSHPDSMARPTMRCVVQMLLGEAEVPIVPRTKPSTSYSTSHLLMSLQDSESDCNDAVITISSSSSSENSFNDRDLV* 700
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr10g1972 699 SMART serkin_6 369 635 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr10g1972 699 CDD lectin_legume_LecRK_Arcelin_ConA 57 269 IPR001220 GO:0030246
Apr10g1972 699 Pfam Protein kinase domain 371 591 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr10g1972 699 ProSitePatterns Protein kinases ATP-binding region signature. 375 398 IPR017441 GO:0005524
Apr10g1972 699 SUPERFAMILY Concanavalin A-like lectins/glucanases 41 269 IPR013320 -
Apr10g1972 699 PANTHER L-TYPE LECTIN-DOMAIN CONTAINING RECEPTOR KINASE VIII.2 36 693 - -
Apr10g1972 699 ProSitePatterns Serine/Threonine protein kinases active-site signature. 488 500 IPR008271 GO:0004672|GO:0006468
Apr10g1972 699 Gene3D - 39 278 - -
Apr10g1972 699 CDD STKc_IRAK 375 642 - -
Apr10g1972 699 Pfam Legume lectin domain 41 274 IPR001220 GO:0030246
Apr10g1972 699 Gene3D Transferase(Phosphotransferase) domain 1 445 649 - -
Apr10g1972 699 ProSiteProfiles Protein kinase domain profile. 369 651 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr10g1972 699 SUPERFAMILY Protein kinase-like (PK-like) 351 681 IPR011009 -
Apr10g1972 699 Gene3D Phosphorylase Kinase; domain 1 331 444 - -
Apr10g1972 699 PANTHER - 36 693 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr10g1972 Apr-Chr10 32634600 32636948 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr10g1972 22 681 Receptor kinase-like Gene Family AT3G53380 65.262 0.0 889
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_L-LEC Apr10g1972 Pkinase 2.8e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr10g1972 - - gmx:100815895 1078.93
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr10g1972 10 32634600 32636948 Apr9g1279 9 22430685 22433330 PCT