Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr10g1966 ATGACAATGGAAGAAGAGTCCTTGGCAGCAGTCCCATTTGACAGAGCCGTTGAACAGGCAATTGTATCTATAAAGAAAGGTGCATATTTACTAAAGTGTGGTCGTAGAGGAAAGCCTAAGCTCTGTCCTTTCAGACTTTCTCAGGATGAGAGAAATTTGATTTGGTACTCAGGGCAGCAGGAAAAGCATTTGCGATTGAGTGCAGTTACAAAAATTGTTCAAGGGCAGGGAAATATAAGGTCCCAAAGGCAAAATGAACCCGAAAAGGAGTGCCATTCATTTTCACTAATCTATGCAAATGGAGAACGTTCTCTTGATCTGATATGCAAGGACAAAGCACAAGCTGCTTCTTGGTTTGTTGGGTTGAAAGCTGTGCTTTCAAGGTGTCAGCATCCAAGAGCTTTTAGTAGTTTAAGAAGCTGCAAAGGGGTGCAGAGTTGTGTTAGTAGTCCAGCTGGAATCTTACGAAGAAAGAAAAATCTTGGCCTTCTTGATGATGCCTCTCAGTTTACTCAGGTACATAGCTTATGTGCAAGTCCGACTTTGTCACTATCAGAAAGGTGCTTTTCTGATGGCTTGTCATGCACATCCGATAACTTCTATTCATCTGCATCTTACCTCTCCAGCACTCATGGCATAACAGATAATTCAGTCCCAAGTTCTCCATATATTGATCCAGATATTCATAGCAACATCGAGTCAAAACGTGTTGACAAGGAGCACAAGAGGAATATGTCCTATAGATCTCTAATGCCTCCTAGCTCCCCACGTGTAGGAAACAACAATGTATTGAAGGATGTGATGATATGGGGTGGAGGAATTGGATGCCTTGTAGGGATTGTGAATGAAAGGTTTGTTCAACATGGCATTTATTCTTTGGTGCCTAAGTTACTAGAATCAACTGTAATGTTAGATGTACAAAATGTAGCTTTAGGAGGAAAACATGCTGCCTTAGTTACAAAACAAGGGGAAGTATTTTGTTGGGGTCAAGGGAAGTGGGGAAGGTTGGGGCAAAAAATTGATATGGACATTAGCTCCCCCAAGATAGTTGATTATCTTAATGGTATTAATGTAAAACATGTTGCTTGTGGTGAGTATCATACATGTGCTTTGACAGATTCTGGTGAAGTATATACATGGGGGAATGATGTTTGTTGTGCAGATTTGGTTAATGAAGGGAGAATTAGAAGTCAGTGGATACCACAAAAACTTTCTGGACCCTTAGATGGTATAACTATCTCAAGTGTTGCTTGTGGTGAATGGCATACTGCAATTGTTTCTAGCTGTGGGAGGTTATTTACATATGGAGATGGTACATTTGGGGTTCTTGGGCATGGTGATCTTCAGAGTTTGTCCACTCCAAAAGAAGTTGAATCTCTTAGTGGTCTATGGGTGAGGTCTGTAGCATGTGGATCATGGCATACAGCTGCTATTGTTGAAGTCATGTTTGATCGGTTTAGGTACAATAGTGCTAGTGGTAAGTTGTTTACATGGGGTGATGGTGATGAAGGGAGGCTGGGTCACGCTGATAATGGAAGCAAGCTTGTACCCACATGTGTTACACAACTTGTTGACTATGATTTTGTTCAAGTATCATGTGGAAGAATGTTGACAGTAGCACTTACTAACATGGGTAAGGTTTTTGCAATGGGAAGTGCTAAGTATGGACAACTAGGAAATCCACATGCTAGGGACAAAGCAGTTATGGTTGAAGGACAACTTAAGCAAGAGTTTGTTAAAGTGATATCATCTGGTTCATACCATGTTGCTGTTTTGACTTCTGCTGGGAGTGTTTATACATGGGGCAAGGGTGAAAATGGCCAATTGGGGCTTGGTGATACTGAAGACAGACACACACCTTGTTTTGTTGAGGCTCTAAGAGATAGGCAGATAGATACCATTACTTGTGGTCCAAGTTTCACAGCTGCAATTTGTTTACACAAACCAATTTCTATTAGTGACCAATCGACATGTAGTGGTTGTAGGTTGCCATTTGGGTTCACAAGGAAAAAGCATAATTGTTATAACTGTGGCCTTCTGTTCTGCCGTGCTTGTAGTAGTAAAAAGATTGTAAATGCACCTCTAGCCCCAAGTAAGAGCAAGGCGTTTCGGGTTTGTGACCAGTGCTTTGATAAACGGCAAGGAGGTACACATTCAGCAATGGCATCAAAGTCTAGAAATTATAACACTCAGCAGATGCTTAAGCATCAGCAGAAAATTGTTGATGTGACTGAAGATAGGGGAGAGACAACTGTGACACAAGGTCCTTTGTTATCGCTTGGTCAATCATGTTACAGAAAAAGCATGCCTAGCGGGCGTAAGGATTGGAAAAACCAACAAGAAACCCAACAGGACTTGGAAGATAGTTCTTCCATGTTAGGTGGAATGCCACAATGGGGGCAAGTTCCATGTCCTGCCATATTCAAGATCAATTGTGCAGAAAATTCAGTTGTGCATGTTTCTTCATCCAAAAATAAATTAGCTGCTGTTTCTCCACTTAATGTGGAATCTACAGTATGCAACTTCACCAATGCAGAGACAGAAACAACAAAGTCTGATAAGATGCTCATAGAAGAAGTTCAGAGGCTGAGAGCTGAGGCTACGAGACTTGAAGAACAGTGTGAGCTCAAAAACCAAAAAATACAGGAGTGTCAACAAAAAATTGAGGATAGTTGGTTTGTGGCAAGGGAGGAAGCTGCTAAGTGCAAGGCAGCAAAAGAGGTCATAAAAGCTTTGGCATTAAGGCTTCATACAATATCAGGAAAAGATAACACTGGGCTACAAGAAATTTTGCCTAATTTGGCACCCATACACACGGATATGAAGAGTCCAAGAGATGGCAATGTGGATAGTCTATCCAATTCCCCTATCGTATTCTCTGACACATTAAAATCCAAATTTGGGAGAAGCATGTTCCCCAAAAATGATAAATTAATGGAGAATTCTAACTTAAATAGAGCAGAATCTCAACAAGACACCACAAATGGTTTGAAGGTTGAATGGGTAGAACAATATGAGCCTGGTGTTTACATCACTTTCACAACCTTGCCGTGTGGGAAAAAGGGCCTTAAGCGAGTCAGATTTAGTCGGAAGCGATTTTCAGAGAAGGAAGCTGAAAGATGGTGGGAAGAGAATCAAGTGACAGTGTATCAAAAGTATGGGATTGAAGGATACATAAACACTAGCCAAAGTCAGGTGAAAGGCTAA 3207 0.4116 MTMEEESLAAVPFDRAVEQAIVSIKKGAYLLKCGRRGKPKLCPFRLSQDERNLIWYSGQQEKHLRLSAVTKIVQGQGNIRSQRQNEPEKECHSFSLIYANGERSLDLICKDKAQAASWFVGLKAVLSRCQHPRAFSSLRSCKGVQSCVSSPAGILRRKKNLGLLDDASQFTQVHSLCASPTLSLSERCFSDGLSCTSDNFYSSASYLSSTHGITDNSVPSSPYIDPDIHSNIESKRVDKEHKRNMSYRSLMPPSSPRVGNNNVLKDVMIWGGGIGCLVGIVNERFVQHGIYSLVPKLLESTVMLDVQNVALGGKHAALVTKQGEVFCWGQGKWGRLGQKIDMDISSPKIVDYLNGINVKHVACGEYHTCALTDSGEVYTWGNDVCCADLVNEGRIRSQWIPQKLSGPLDGITISSVACGEWHTAIVSSCGRLFTYGDGTFGVLGHGDLQSLSTPKEVESLSGLWVRSVACGSWHTAAIVEVMFDRFRYNSASGKLFTWGDGDEGRLGHADNGSKLVPTCVTQLVDYDFVQVSCGRMLTVALTNMGKVFAMGSAKYGQLGNPHARDKAVMVEGQLKQEFVKVISSGSYHVAVLTSAGSVYTWGKGENGQLGLGDTEDRHTPCFVEALRDRQIDTITCGPSFTAAICLHKPISISDQSTCSGCRLPFGFTRKKHNCYNCGLLFCRACSSKKIVNAPLAPSKSKAFRVCDQCFDKRQGGTHSAMASKSRNYNTQQMLKHQQKIVDVTEDRGETTVTQGPLLSLGQSCYRKSMPSGRKDWKNQQETQQDLEDSSSMLGGMPQWGQVPCPAIFKINCAENSVVHVSSSKNKLAAVSPLNVESTVCNFTNAETETTKSDKMLIEEVQRLRAEATRLEEQCELKNQKIQECQQKIEDSWFVAREEAAKCKAAKEVIKALALRLHTISGKDNTGLQEILPNLAPIHTDMKSPRDGNVDSLSNSPIVFSDTLKSKFGRSMFPKNDKLMENSNLNRAESQQDTTNGLKVEWVEQYEPGVYITFTTLPCGKKGLKRVRFSRKRFSEKEAERWWEENQVTVYQKYGIEGYINTSQSQVKG* 1069
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr10g1966 1068 Pfam FYVE zinc finger 654 712 IPR000306 GO:0046872
Apr10g1966 1068 MobiDBLite consensus disorder prediction 768 789 - -
Apr10g1966 1068 Pfam Pleckstrin homology domain 18 125 IPR001849 -
Apr10g1966 1068 PRINTS Chromosome condensation regulator RCC1 signature 306 319 IPR000408 -
Apr10g1966 1068 PRINTS Chromosome condensation regulator RCC1 signature 325 341 IPR000408 -
Apr10g1966 1068 PRINTS Chromosome condensation regulator RCC1 signature 375 391 IPR000408 -
Apr10g1966 1068 PRINTS Chromosome condensation regulator RCC1 signature 416 432 IPR000408 -
Apr10g1966 1068 PRINTS Chromosome condensation regulator RCC1 signature 432 446 IPR000408 -
Apr10g1966 1068 PRINTS Chromosome condensation regulator RCC1 signature 534 552 IPR000408 -
Apr10g1966 1068 PRINTS Chromosome condensation regulator RCC1 signature 591 612 IPR000408 -
Apr10g1966 1068 SUPERFAMILY FYVE/PHD zinc finger 653 729 IPR011011 -
Apr10g1966 1068 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 323 374 IPR000408 -
Apr10g1966 1068 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 375 429 IPR000408 -
Apr10g1966 1068 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 16 1056 - -
Apr10g1966 1068 Pfam Regulator of chromosome condensation (RCC1) repeat 430 478 IPR000408 -
Apr10g1966 1068 Pfam Regulator of chromosome condensation (RCC1) repeat 492 541 IPR000408 -
Apr10g1966 1068 Pfam Regulator of chromosome condensation (RCC1) repeat 374 425 IPR000408 -
Apr10g1966 1068 Pfam Regulator of chromosome condensation (RCC1) repeat 596 644 IPR000408 -
Apr10g1966 1068 Pfam Regulator of chromosome condensation (RCC1) repeat 323 371 IPR000408 -
Apr10g1966 1068 ProSiteProfiles BRX domain profile. 999 1054 IPR013591 -
Apr10g1966 1068 SUPERFAMILY PH domain-like 16 126 - -
Apr10g1966 1068 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 545 595 IPR000408 -
Apr10g1966 1068 ProSiteProfiles Zinc finger FYVE/FYVE-related type profile. 652 714 IPR017455 -
Apr10g1966 1068 SMART fyve_4 646 715 IPR000306 GO:0046872
Apr10g1966 1068 Coils Coil 853 887 - -
Apr10g1966 1068 Pfam Transcription factor regulating root and shoot growth via Pin3 999 1053 IPR013591 -
Apr10g1966 1068 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 468 478 IPR000408 -
Apr10g1966 1068 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 493 544 IPR000408 -
Apr10g1966 1068 PANTHER F12P19.9 PROTEIN 16 1056 - -
Apr10g1966 1068 CDD PH_PLC_plant-like 15 127 - -
Apr10g1966 1068 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 653 725 IPR013083 -
Apr10g1966 1068 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 430 481 IPR000408 -
Apr10g1966 1068 Gene3D - 16 133 IPR011993 -
Apr10g1966 1068 Gene3D - 261 386 IPR009091 -
Apr10g1966 1068 Gene3D - 387 483 IPR009091 -
Apr10g1966 1068 Gene3D - 484 652 IPR009091 -
Apr10g1966 1068 SUPERFAMILY RCC1/BLIP-II 266 648 IPR009091 -
Apr10g1966 1068 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 596 647 IPR000408 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr10g1966 Apr-Chr10 32583243 32590481 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr10g1966 1000 1058 Major Intrinsic Protein MIP AT1G31880 47.458 1.01e-12 69.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr10g1966 - - gmx:100794953 1927.14