Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr10g1965 ATGTCACGAACACTAACACTAAACATTTTTGTATTCACACTCGTTATTTCAGGCGCCACTTCTCATTACTCTTCTCCATCACCACCAGCAGCGCCATCTTCCCAAAATGCCCCTGAACCTCCCCCCGCCGCCGAATGGCTATTCGCCCATGCCACCCACTACGCCGCTAGCGACGCGCTGGGTGGCGCGTGCGGCTACGGCGACCTCATCAAGGGCGGTTACGGCATGGCCACTGCCGCCCTCAGCGACGCGCTCTTCGGCCGCGGCCAGATCTGCGGCGCCTGCTTTGAGCTTCGCTGCCGTGAGGAGGAGGCGGCATTCGACCGGCGGTGGTGCATCTCCGGCAACTCGATCGCGGTGACCGCCACCAATTTCTGCGCTCCGAACTATGGGTTGGAGGCAGAGAGCTTGGGTGGACACTGTAACCCTCCGAAGCAGCATTTTGTGGTTCCCATTGAAGCTTTCGAGAAGATCGGAATCTGGAAAGCTGGTAGTGGTAACATGCCCGTTCAGTTTCGCAGGATAAAGTGCAGAAGGGAAGGGGGAATCAGGTTCACAATTACTGGTTCTGGTATTTTCATTTCTGTGCTGATTAGTAATGTGGCTGGCATGGGAGACATTGTTGCTGTGAAGGTTAAGGGTTCAAGAACTGGTTGGCTTCCAATGGGTCGGAATTGGGGTCAGAATTGGCATGTTAATGCGTTGTTACAGAACCAACCTCTTTCATTTGAGGTTATGGGCAGTGATGGGATAACTGTTACATCCTACAATGTTGCTCCCAAGGATTGGAGCTTTGGACAAACCTTTCAAGGCAAGCAATTTGAGTCTTGA 831 0.5331 MSRTLTLNIFVFTLVISGATSHYSSPSPPAAPSSQNAPEPPPAAEWLFAHATHYAASDALGGACGYGDLIKGGYGMATAALSDALFGRGQICGACFELRCREEEAAFDRRWCISGNSIAVTATNFCAPNYGLEAESLGGHCNPPKQHFVVPIEAFEKIGIWKAGSGNMPVQFRRIKCRREGGIRFTITGSGIFISVLISNVAGMGDIVAVKVKGSRTGWLPMGRNWGQNWHVNALLQNQPLSFEVMGSDGITVTSYNVAPKDWSFGQTFQGKQFES* 277
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr10g1965 276 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 192 271 IPR007117 -
Apr10g1965 276 Gene3D - 182 274 IPR036749 -
Apr10g1965 276 SMART dpbb_1 78 172 IPR007112 -
Apr10g1965 276 SUPERFAMILY PHL pollen allergen 179 271 IPR036749 -
Apr10g1965 276 SUPERFAMILY Barwin-like endoglucanases 43 200 IPR036908 -
Apr10g1965 276 Gene3D - 31 178 IPR036908 -
Apr10g1965 276 PANTHER EXPANSIN-A15 29 275 IPR002963 GO:0009664
Apr10g1965 276 Pfam Lytic transglycolase 78 171 IPR009009 -
Apr10g1965 276 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 61 182 IPR007112 -
Apr10g1965 276 PRINTS Expansin signature 73 87 IPR002963 GO:0009664
Apr10g1965 276 PRINTS Expansin signature 138 155 IPR002963 GO:0009664
Apr10g1965 276 PRINTS Expansin signature 181 193 IPR002963 GO:0009664
Apr10g1965 276 PRINTS Expansin signature 193 214 IPR002963 GO:0009664
Apr10g1965 276 PRINTS Expansin signature 228 249 IPR002963 GO:0009664
Apr10g1965 276 PRINTS Expansin signature 257 273 IPR002963 GO:0009664
Apr10g1965 276 Pfam Expansin C-terminal domain 183 260 IPR007117 -
Apr10g1965 276 PANTHER EXPANSIN-A13 29 275 - -
Apr10g1965 276 PRINTS Expansin/Lol pI family signature 45 60 IPR007118 GO:0005576
Apr10g1965 276 PRINTS Expansin/Lol pI family signature 165 181 IPR007118 GO:0005576
Apr10g1965 276 PRINTS Expansin/Lol pI family signature 219 233 IPR007118 GO:0005576
Apr10g1965 276 PRINTS Expansin/Lol pI family signature 257 271 IPR007118 GO:0005576
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr10g1965 Apr-Chr10 32563841 32565648 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr10g1965 45 276 Expansin Gene Family AT3G03220 71.915 4.90e-123 350
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr10g1965 - - gmx:100790211 442.195
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr10g1965 10 32563841 32565648 Apr9g1272 9 22363867 22366184 PCT