Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr10g1964 ATGGCGATTCAAGACCAAAATGGATATAACAGATCACAGGGTGGTCCTCCAGTAGGAGATGGAGTATCGTTGAGTTCAGGACGGCATTCCGTTTCACATATTCAACTTAATGATCAGTTTTCCTGCGGAAATGACTATGCTCTGAAGGTAAGGAAACCATATACTATCACAAAACAGCGAGAAAGATGGACAGATGAAGAACATAAGAAGTTCCTTGAAGCTTTAAAGCTGTATGGCCGAGCGTGGAGACGCATTGAAGAACATGTTGGCACAAAGACTGCTGTTCAGATTCGAAGTCATGCTCAGAAGTTTTTTTCTAAGGTTCTTCGTGACTCTACTGGAAACGTTACAAACCCTGTGGAGTCAATTGAAATTCCGCCTCCAAGACCAAAGCGAAAGCCAATGCATCCTTACCCTCGTAAGCTAGTTGAGACCCCTAATAAGGAAATCTTGATCCAAGAACAACCTATGAAGTCATCGGATTTTGATCAAGAAAACCAATCTCCAAAATCAGTATTGTCTGCCGTTGGTTCAGACAGCCTTGGCTCCTCTGATTCAGATACACCAAATGGAAGTTTATCTCCCGCGTCATCCATTAGTGGCATCCATACAAGCGGTTTTACACTTGCCGAACCCAAAACAACACCTGAGGAAGCTGCACTAAATGCGGATTCAGCTCATAATGAGAAACCCCTTATGAACTTCAAGCTTCTCCACAACAGAAGTCTTTCTACCAGAGAAGACACGGCAGAAGAATCTTCTGGTCGAACTCTCAAACTTTTTGGAATGACTCTATTTGTAACAGAAGAATCTTTTCCAACCATTGAGGCATGCAAACCAATACCTCTAGACGCACATGCGCCTTGCCTTAGCAAAGGGTACGGAAAATTGGAACTTGTTGGCCACAATACACCAAGTGAAACATCTGAAATTTCCCAGCTTAAGGTGAGAGTGAGAGCTGAAAGATGTGGGAAAGGGTTTGTACCATATAAAAGGTGCATGGAAGGGGGAGAAAACCGGTCTTCATCTGTAACAGTTCATAATAGAGAAGAGCAATGCATCCATCTTTCCCTTTAG 1077 0.4308 MAIQDQNGYNRSQGGPPVGDGVSLSSGRHSVSHIQLNDQFSCGNDYALKVRKPYTITKQRERWTDEEHKKFLEALKLYGRAWRRIEEHVGTKTAVQIRSHAQKFFSKVLRDSTGNVTNPVESIEIPPPRPKRKPMHPYPRKLVETPNKEILIQEQPMKSSDFDQENQSPKSVLSAVGSDSLGSSDSDTPNGSLSPASSISGIHTSGFTLAEPKTTPEEAALNADSAHNEKPLMNFKLLHNRSLSTREDTAEESSGRTLKLFGMTLFVTEESFPTIEACKPIPLDAHAPCLSKGYGKLELVGHNTPSETSEISQLKVRVRAERCGKGFVPYKRCMEGGENRSSSVTVHNREEQCIHLSL* 359
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr10g1964 358 MobiDBLite consensus disorder prediction 115 209 - -
Apr10g1964 358 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 58 107 IPR006447 GO:0003677
Apr10g1964 358 MobiDBLite consensus disorder prediction 126 143 - -
Apr10g1964 358 SMART sant 59 107 IPR001005 -
Apr10g1964 358 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 55 109 IPR017930 -
Apr10g1964 358 Gene3D - 62 108 - -
Apr10g1964 358 ProSiteProfiles Myb-like domain profile. 55 105 IPR001005 -
Apr10g1964 358 Pfam Myb-like DNA-binding domain 60 103 IPR001005 -
Apr10g1964 358 PANTHER SWI/SNF COMPLEX-RELATED 29 274 - -
Apr10g1964 358 PANTHER PROTEIN REVEILLE 7-RELATED 29 274 - -
Apr10g1964 358 ProSiteProfiles SANT domain profile. 58 109 IPR017884 -
Apr10g1964 358 MobiDBLite consensus disorder prediction 152 209 - -
Apr10g1964 358 MobiDBLite consensus disorder prediction 1 27 - -
Apr10g1964 358 CDD SANT 62 105 IPR001005 -
Apr10g1964 358 SUPERFAMILY Homeodomain-like 54 107 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr10g1964 Apr-Chr10 32559008 32562339 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Apr10g1964 Myb_DNA-binding 7.9e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr10g1964 - - gmx:780539 530.406