LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Apr10g1952	ATGGCGAGTTCATTAGAATGTAAAGTAGAACTTGTCAATGGTGAAGACAAGATTCATATGGCACAAGAAGACGACGTTAATGTTGCTATCCAATGGACAAGTTCAATTGTTTTTTCCATGACATTGCATTGCGCTTTCGAGTTGGGCGTTTTCAACATCATAGCGAAATCGGGTGAAGGTGCCAAGCTCTCTGCAGAGGATATTGCACTTCAAATTGGGGGCAACAACCCAGAAGCACCCCAAATGCTTGATCGTATTCTTGGGCTATTGGCTAGTTATTCTGTATTACATTGCTCTATTTCTCAAGATTCACGAAGGCTCTATGCTCTGACACCTCCCTCCAAATATTTTGTGACTAATGACGATGATGGTGTCTCACTTGGCCCCTTAATGGCTTTAGCTAAAGACAAAGTCGAGCATGTAAGCTGGATGGAGCTAAAAGGAGCAATCCTAGAAGGTGGTTTACCATTCAACAGGGCTCATGGCATGAATATCTTTGAGTATTCAAGGGGAGATCTCAGGTTTAATGAAGTTTTCAACAGAGCAATGCTGCACACAACCACTATAACTACAAAGAAGATCCTTGAAGTCTACAAAGGATTTGAGCAAATAGGTAGATTGGTGGATGTTGGTGGTGGTCTTGGAGTCAATCTCGAGTTGATCACTTCCAGATACCCTCATCTCCACGGTGTGAATTTTGATTTACCTCATGTCATCAAACATGCTCCTGTCTATGCTGGCGTGGAGCATGTGGAAGGAGATATGTTTGAGAGCGTTCCTAGAGGAGATGCCATTTTTATGAAGTGGATACTTCATAATTGGAGTGATGAAGAGTGCTTGAAGCTCTTGAAGAATTGCCACAAGGCTATACCTGATGATGGAAAGGTTATTGTGGTGGATACAATTCTTCCCATTTTGCCAGTGAAAGGAGCCAAAGTTGCTTTCATATGGGACCTCTACATGATGACTCAATTTTCAGGAGGAAAAGAGAGAACCCAGCAAGAATTCATGGATTTGGGAACAGCATCTGGATTTACTCGCTTCAAAGTCGTCTGTGCAGTTTCTGATTGCCTTGTTGAGAAAGAAGTGGTTAGGAGAAAGCAAATGATGGAGAAGATATGTAATGCAAAAGGGGAGGGTCTTGATTATGCCAGTTTGGTGGAGATTGTATTCTCTTGGACTCTCAAGGATGTTCTCAACGAAAACCTCTGCAAGCACAAAATACGGAAGATCCCGCAAACATTCTTGTCAACTAAAGATTACATGAACTCCTTCATTCCTTCACTCGTTGAGGAAATTCACAGTGAACTGTCTTCAAGCTTAACAGGCGTGTCTCGAGCTCCCTTTTGTGAAATCTTGAGTGTTGAACTTGAAAGATCAAGAAGCTTCACACCTACCAAGGGATTTTTCTACCAAATTTCAGTGAAAAGAACCAATAATGATGTCAAAGATGTTGGAAAATATGAGCCTGAGGTTGGAGATCTATTTGCCTTCACAGATGTTAAACCAAAAACTGTAGATGACCTGAACAGGCCCAAAAGAAACTACCATATCGCTTATGTTCATGGTTCAAAAGAAAACACTGACAATATCTCAATTCTATCATCCAAATGCTTTGACATGGACATTGAGTTAGCCTTGAAGAGCAACAATGCACCAAAGCTTTATGCCATCTATCTTTTGAACCTGACAACAAATATTCGTATTTGGAAAGCCTTGAACTCCGAGCTGGAGGGTGCAAGCACGACCATGATTAAAAAAGTGCTACAAGCTGATTCAAATAATGGAGAAAATTGTCATCTTTGCTTTTCTGAGGAAAACCATAGTGTAGCTTGTTCTAGGGTACAAAACATAATCCAGTCTCAGAATCTGAATGAATCCCAGAAAAATGCAGTTCTAAGCTGTGTTACCATGAGGGAATGTCATCATAATGACAACATTAAACTTATATGGGGCCCACCAGGGACTGGCAAGACAAAGACAGTGGCTTCCTTGTTATTTTCCCTTCTCAAGTTGAAAACTAGAACATTAACATGTGCTCCAACTAATACTGCAGTGTTGGAAGTGGCTTCTCGCCTCCAGAATTTAGTTAAGGAGTCACTTGACCATGATACATATGGCTTTGGTGACATAGTGGTATTTGGCAATAAATCTCGAATGAAAGTAGATGGATATCGCGGCCTCCATGATGTCTTTCTTGATTATCGTGTGGATAATCTTGTCGAGTGTTTTGCTCCATTGACTGGATGGAAACATTACTTGGAATCAATGATCAAGTTGCTTGAGGACCCCAAAGAGCAATATGGTTTGTATAAGTGTGGCATAGGTGATGAGCAAAAAGATGGCCTTATGTCATTAGAAGAGTTTGTTAAGCAAAAGTACAGTTATGTAGAACTTGCATATCGTTCATACAAGCAACGTGGGAAGAATGATGATCCTCTAACACTAGAGGAATTTTTGAAGAAAAAATACTCTTACATTGAAGCGCAATACCTTTTGTATAAGGATGTACGCAAGAATAGAGTCATGACATTGGAACAATTTTTTATGCAGAGATTCAGTCTCATTGGAGAGAAACTCAAGGTATACAAAAGAACATTGTATACACACCTACCAACTTCTTTAATTCCATTTGAGGAGATAAAGAAAATTTCTTCAGCTCTTGATTTACTAGGATCTCTTGAAACCTCTTTTAGTAAAGCCAAGTTGAAGCAAACTTTCCAAGGCTGTGAGGATGAAGAAAGCATTCTTGACTGCCCTGGAAGGTTAAGAATAAAAAAGGACTTCCTTCTCAAACTGAGATCACTTTCCAAGACAATTTCACTTCCAAACATTACTGACAAATATGGAGTGGCAAAAATTTGCTTGATGAATGCGTGCCTGATTTTTTGTACTGCAGCAAGTTCTACCAGACTGTTCACAGATGGAATGACACCGGTGCAATTTTTAGTTATTGATGAAGCAGCACAGCTAAAGGAATGTGAATCAGCCATTCCATTGCAGCTGCCAGGCCTCCACCATGTAGTCCTCATTGGTGATGAGAGACAACTTCCTGCAGTAGTCAAAAGCAAGGTTTCTGAAGAGGCTGAATATGGAAGAAGTTTATTTGAGAGGCTGGTATTGTTGGGATACAAGAAGCATCTGCTTAATGTTCAGTATAGAATGCATCCATCCATCAGCTTATTCCCAAATAAGGAGTTCTATGATGAGCAACTTACTGATGCCCCCATTGTCAGAGAAATGAGCTATAATAAGTGTTTTCTTGAAGGAAAAATGTATTCTTCATATTCATTTATAAACATAGCTAAGGGTAAAGAGCAACAGAGTCATGGATACAGTGTGAAGAACAAGATTGAGGCTGCTGTTGTTTCTAAGATTATCGAAAGCCTTGAAAATGAATTTTTGAGGACAAAGAAGAAAGTTAGCATAGGAATCATATCTCCATATAATGCTCAGGTGTATGAAATCCAGGAAAAAATTAAGCAGAACAATTTGGTTTCTGATCCTGACTTCGCTGTTAGTGTTCGTTCTGTTGATGGCTTTCAAGGTGGTGAAGAAGATATAATAATAATCTCCACGGTGAGATCTAATGATAATGCAAAAATTGGTTTTCTTTCCAATCGGCAGAGAGCAAATGTGGCACTGACTCGGGCTAGACATTGCCTTTGGATATTAGGGAATGCAAAAACTTTAAAAAGTAGTGACTCTGTATGGAGAAATCTAGTGCATGATGCTGAAGGAAAAGAGTGTTTCCATAATGCCGATGATGACAAGAAACTGGCAGAGGCCATTGAGGAAGCCTTGTTTATAGAATTACTTGATGAATCCGAGTCCCCATTCAAGAAACTAAGTCTAAGGGATACATCACCAACAACAGCTAGCACTTCCAGAGGTTCTTCTTTAAGGGGTAGGCCATGGAAACGAAGGTGGTGA	3933	0.3994	MASSLECKVELVNGEDKIHMAQEDDVNVAIQWTSSIVFSMTLHCAFELGVFNIIAKSGEGAKLSAEDIALQIGGNNPEAPQMLDRILGLLASYSVLHCSISQDSRRLYALTPPSKYFVTNDDDGVSLGPLMALAKDKVEHVSWMELKGAILEGGLPFNRAHGMNIFEYSRGDLRFNEVFNRAMLHTTTITTKKILEVYKGFEQIGRLVDVGGGLGVNLELITSRYPHLHGVNFDLPHVIKHAPVYAGVEHVEGDMFESVPRGDAIFMKWILHNWSDEECLKLLKNCHKAIPDDGKVIVVDTILPILPVKGAKVAFIWDLYMMTQFSGGKERTQQEFMDLGTASGFTRFKVVCAVSDCLVEKEVVRRKQMMEKICNAKGEGLDYASLVEIVFSWTLKDVLNENLCKHKIRKIPQTFLSTKDYMNSFIPSLVEEIHSELSSSLTGVSRAPFCEILSVELERSRSFTPTKGFFYQISVKRTNNDVKDVGKYEPEVGDLFAFTDVKPKTVDDLNRPKRNYHIAYVHGSKENTDNISILSSKCFDMDIELALKSNNAPKLYAIYLLNLTTNIRIWKALNSELEGASTTMIKKVLQADSNNGENCHLCFSEENHSVACSRVQNIIQSQNLNESQKNAVLSCVTMRECHHNDNIKLIWGPPGTGKTKTVASLLFSLLKLKTRTLTCAPTNTAVLEVASRLQNLVKESLDHDTYGFGDIVVFGNKSRMKVDGYRGLHDVFLDYRVDNLVECFAPLTGWKHYLESMIKLLEDPKEQYGLYKCGIGDEQKDGLMSLEEFVKQKYSYVELAYRSYKQRGKNDDPLTLEEFLKKKYSYIEAQYLLYKDVRKNRVMTLEQFFMQRFSLIGEKLKVYKRTLYTHLPTSLIPFEEIKKISSALDLLGSLETSFSKAKLKQTFQGCEDEESILDCPGRLRIKKDFLLKLRSLSKTISLPNITDKYGVAKICLMNACLIFCTAASSTRLFTDGMTPVQFLVIDEAAQLKECESAIPLQLPGLHHVVLIGDERQLPAVVKSKVSEEAEYGRSLFERLVLLGYKKHLLNVQYRMHPSISLFPNKEFYDEQLTDAPIVREMSYNKCFLEGKMYSSYSFINIAKGKEQQSHGYSVKNKIEAAVVSKIIESLENEFLRTKKKVSIGIISPYNAQVYEIQEKIKQNNLVSDPDFAVSVRSVDGFQGGEEDIIIISTVRSNDNAKIGFLSNRQRANVALTRARHCLWILGNAKTLKSSDSVWRNLVHDAEGKECFHNADDDKKLAEAIEEALFIELLDESESPFKKLSLRDTSPTTASTSRGSSLRGRPWKRRW*	1311

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Apr10g1952	1310	Pfam	AAA domain	623	1024	IPR041677	GO:0004386
	Apr10g1952	1310	CDD	AdoMet_MTases	206	303	-	-
	Apr10g1952	1310	ProSiteProfiles	SAM-dependent O-methyltransferase class II-type profile.	30	365	IPR016461	GO:0008168
	Apr10g1952	1310	Gene3D	-	13	117	IPR036388	-
	Apr10g1952	1310	SUPERFAMILY	S-adenosyl-L-methionine-dependent methyltransferases	124	352	IPR029063	-
	Apr10g1952	1310	MobiDBLite	consensus disorder prediction	1283	1301	-	-
	Apr10g1952	1310	PANTHER	DNA2/NAM7 HELICASE FAMILY	381	1275	IPR045055	-
	Apr10g1952	1310	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	623	1234	IPR027417	-
	Apr10g1952	1310	CDD	SF1_C_Upf1	1055	1246	IPR041679	-
	Apr10g1952	1310	PANTHER	P-LOOP CONTAINING NUCLEOSIDE TRIPHOSPHATE HYDROLASES SUPERFAMILY PROTEIN	381	1275	-	-
	Apr10g1952	1310	MobiDBLite	consensus disorder prediction	1283	1310	-	-
	Apr10g1952	1310	Pfam	O-methyltransferase domain	143	345	IPR001077	GO:0008171
	Apr10g1952	1310	Gene3D	-	561	1052	IPR027417	-
	Apr10g1952	1310	Gene3D	Vaccinia Virus protein VP39	119	362	IPR029063	-
	Apr10g1952	1310	SUPERFAMILY	"Winged helix" DNA-binding domain	24	120	IPR036390	-
	Apr10g1952	1310	Pfam	Domain of unknown function (DUF6469)	465	574	IPR045529	-
	Apr10g1952	1310	Pfam	Dimerisation domain	40	91	IPR012967	GO:0046983
	Apr10g1952	1310	Gene3D	-	1053	1265	IPR027417	-
	Apr10g1952	1310	Pfam	AAA domain	1031	1229	IPR041679	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Apr10g1952	Apr-Chr10	32441058	32449114	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Apr10g1952	18	352	Monolignol Biosynthesis Gene Families	AT5G54160	52.047	3.61e-109	347

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Apr10g1952	-		K10706	aprc:113848912	2582.75