LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Apr10g1949	ATGGTTCATCTAACTAAGCTAATGGGCTTATTAACTCTGATATGGTGGTGCAGTAATCTTGAAGATGCACTTGCATCCCCACAAACGCACGTAGTAAATAGTGGGTGCAGCACATACAACGCTTCCAACTTGCGTAGCTTCTTTGCTAATATCAATGGAACGTTTTCAGCGCTAAGAGCACAGATTCAGAATCAAAACAAGCACTTTGGCGTAGCACAAGAAGCGAGGGGAGAGACGCTGACATACGCAATGTTTCAATGCAGAAACTATCTCTCAAACAATGATTGTCTCGCTTGCTTCGCCGCCGCCGCCACCCAAATCCGCAACTGCTCCGCCGCCAACGGCGCCAGACTCATCTACGACGGTTGCTTCCTCAGGTATGAGAGCGAGAGATTCTACGATCAGACCACTGAACCTGGTAATGGTGTAGTATGTGGGAACACGAGTGCAAATAGCACTGGTTTTAGAGCTAATGGGCAACAACTGCTAATGGACCTCCAAATAGCAACACCAAAAGTTAAAGGTTTCTATGCAGCTACTAAGATACAGGTGCCTGGTAGTAGTGCAATTTATGCCGTTGCACAATGTGTTGAAACTGCCACAGAGAGTAATTGTCTGAATTGCATGCAAGTTGCATACAACAACTTACAAAGTTGTCTTCCCAAAATAGACGGTAGAGCATATGATGCTGGCTGTTTTATGAGATATTCCATGTCACCCTTCTTTGCTGATAATCAGACCATTGATATCACACCCTACTTAGAACAAGGTGGTTCAAGCAAGAAGTGGGCAATTATCGGTGGTGTTGTAGGAGGCGTTGTGATCCTTCTTGCATTGTTTGCTTGGCGAATATCCAGAAAACCAAAGAGGGTTCCCAGAGCAGGTGACATATTGGGAGCTACCGAGTTGAAAGGTCCGGTTAATTACAAGTATAATGATTTAAAAGCTGCAACAAAAAAATTTAGTAATGAAAATAAACTAGGAGAAGGAGGTTTTGGTGATGTATACAAGGGTACTCTAAAGAATGGAAAGGTTGTGGCGATCAAGAAATTAATGTTGGGCAAATCTAGCAAGATGGAGGATGATTTTGAAGGTGAAGTCAAGCTAATAAGTAATGTTCATCATAGAAATCTCGTTAGACTTCTTGGTTGTTGCAGCAAAGGCCAAGAGAGAATCCTAGTTTATGAATACATGGCAAATAGCAGCCTTGACAAATTCTTATTTGGTAACAAAAAAGGTTCCCTCAATTGGAAACAACGGTATGACATAATTTTAGGCACAGCAAGGGGATTGGCCTATTTACATGAGGAATTCCATGTTTCCATAATACATAGAGATATAAAGACTAGTAATATCCTCTTAGATGATGATCTTCAACCAAAAATTGCTGATTTTGGGTTAGCAAGACTTTTGCCAGGGGATCGATCTCATCTCAGCACAAGATTTGCAGGAACATTGGGATACACAGCACCTGAATATGCAATCCATGGTCAATTATCTGAGAAGGCTGATACCTACAGTTATGGTATTGTAGTCCTAGAAATTATAAGTGGTCAAAAGAGTACTAATGTGAAGGATGATGATGAGGATGGTCGTGAGTACCTTCTTCAACGTGCATGGAAGGTACATGAGAGAGGCATGCACTTGGAGCTAGTGGACAAGGCCATAGACCCAAATGAGTATGATTTTGAAGAAGTGAAGAAAGTCATAGAAATTGCTTTGTTGTGTACTCAAGCATCAGCTGCAACAAGGCCAACAATGTCTGAAGTAGTAGTTCTACTCAAAAGTAAAGGCTTAATAGAGAACTTGCAACCAACTATGCCTGTGTTTGTTGAAACCAATCTCCAGTCTCGAGAAAGGAATTCTTCATCAACTACTGCTTCTTCTTCTAATGCTACTGCTTCCATTTCTGTTCTATCAGCAAGATGA	1929	0.4152	MVHLTKLMGLLTLIWWCSNLEDALASPQTHVVNSGCSTYNASNLRSFFANINGTFSALRAQIQNQNKHFGVAQEARGETLTYAMFQCRNYLSNNDCLACFAAAATQIRNCSAANGARLIYDGCFLRYESERFYDQTTEPGNGVVCGNTSANSTGFRANGQQLLMDLQIATPKVKGFYAATKIQVPGSSAIYAVAQCVETATESNCLNCMQVAYNNLQSCLPKIDGRAYDAGCFMRYSMSPFFADNQTIDITPYLEQGGSSKKWAIIGGVVGGVVILLALFAWRISRKPKRVPRAGDILGATELKGPVNYKYNDLKAATKKFSNENKLGEGGFGDVYKGTLKNGKVVAIKKLMLGKSSKMEDDFEGEVKLISNVHHRNLVRLLGCCSKGQERILVYEYMANSSLDKFLFGNKKGSLNWKQRYDIILGTARGLAYLHEEFHVSIIHRDIKTSNILLDDDLQPKIADFGLARLLPGDRSHLSTRFAGTLGYTAPEYAIHGQLSEKADTYSYGIVVLEIISGQKSTNVKDDDEDGREYLLQRAWKVHERGMHLELVDKAIDPNEYDFEEVKKVIEIALLCTQASAATRPTMSEVVVLLKSKGLIENLQPTMPVFVETNLQSRERNSSSTTASSSNATASISVLSAR*	643

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Apr10g1949	642	ProSitePatterns	Protein kinases ATP-binding region signature.	327	350	IPR017441	GO:0005524
	Apr10g1949	642	MobiDBLite	consensus disorder prediction	616	642	-	-
	Apr10g1949	642	SUPERFAMILY	Protein kinase-like (PK-like)	304	594	IPR011009	-
	Apr10g1949	642	CDD	STKc_IRAK	327	595	-	-
	Apr10g1949	642	PANTHER	PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA	15	639	-	-
	Apr10g1949	642	Gene3D	Phosphorylase Kinase; domain 1	296	397	-	-
	Apr10g1949	642	SMART	serkin_6	321	600	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Apr10g1949	642	Gene3D	-	143	241	IPR038408	-
	Apr10g1949	642	Gene3D	-	28	132	IPR038408	-
	Apr10g1949	642	ProSiteProfiles	Protein kinase domain profile.	321	607	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Apr10g1949	642	PANTHER	CYSTEINE-RICH RLK (RECEPTOR-LIKE KINASE) PROTEIN	15	639	-	-
	Apr10g1949	642	Pfam	Protein kinase domain	322	591	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Apr10g1949	642	Gene3D	Transferase(Phosphotransferase) domain 1	398	604	-	-
	Apr10g1949	642	ProSiteProfiles	Gnk2-homologous domain profile.	29	132	IPR002902	-
	Apr10g1949	642	ProSiteProfiles	Gnk2-homologous domain profile.	137	241	IPR002902	-
	Apr10g1949	642	Pfam	Salt stress response/antifungal	36	129	IPR002902	-
	Apr10g1949	642	Pfam	Salt stress response/antifungal	145	237	IPR002902	-
	Apr10g1949	642	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	442	454	IPR008271	GO:0004672\|GO:0006468

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Apr10g1949	Apr-Chr10	32425622	32429630	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Apr10g1949	2	642	Receptor kinase-like Gene Family	AT1G70520	37.672	9.01e-137	413

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_DLSV	Apr10g1949		Pkinase	1.6e-50	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Apr10g1949	-		-	gmx:100801131	983.4