Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr10g1947 ATGAAGATGTTCGTGCAAGTGGCGTTGTTCTCATCAACGTTGTTATGCATATGGTGGAGCAGTGACGCAGACCCTCAAACACTTCTACTCAACGCTGGGTGCAGCCGTTACAACGCAACAAACTTGAATCGCTTCTTAGCGAATCTGAACGCAACATTTTCAGAGCTGAGAGAAAAGATTAGCAGTGAAAACATGCAGTTTGGGACAGTCACGAAAACGAGTGGAGGTGCCCTTTCATATACAATGTTTCAATGCAGAAACTATCTCTCCAAAAACGATTGTCTCAGTTGCTTCGCCACCGCCTCCGCCCAACTCCGCAACTGCTCCACCGCCAGCGGCGCCCGTGTCACCTACGACGGCTGCTTCTTCAGGTACGAGAGTGAGGGATTCTACGATCAGAGTACTGATCTAGGCAACGGTGTTTCATGTGGGAATCAAACTGCACATGAAAGAGATGTGTTTAGTGCAATTGGACGGCAAGTGCTAATGAACCTCCAAATAGCAACACCCAAAATTAAAGGGTTTTTTGCAGCTACTAAGACACCTGTGGTTGGTGTTGGTGCAATTTATGCCATTGCACAATGTATTCAAACAATCACACCCAGTGGTTGTTCAGATTGCTTGAGAGTTGATTACAACAACATGCATACCTGTCTTCCCAATACAAATGGTAGAGCATATGATGCTGGGTGTTTTATGAGATACTCCACCACACCCTTCTTTGCTGATAACCAGACTATTGATATTAACCCCTATCTAAAACAAGGAGGTTCAAGCAAGAAGTGGGCCATTATTGGTGGTGTTGTTGGAGGTATAGTACTTGTGATCCTCCTTTCATTATTTGTCTGGTGTAGAAGATCTCAAAAACCCAAGAGAGTTTCTAGAGGCAACATATTGGGAGCAACCGAGTTGAGAGGTCCTGTCAACTACAAGTATAATGATTTGAAAGATGCAACAAAAAATTTTAGTGATGAAAATAAATTAGGAGAAGGAGGCTTTGGAGATGTATACAAGGGTACACTGAAAAATGGGAAAGTTGTAGCAGTCAAAAAATTAATTTTAGGCAAATCCGACAAGACTGATGATGATTTTGAAAGTGAAGTCAAGCTTATAAGTAATGTTCATCATAGAAATTTGGTCCGGCTTCTTGGTTGTTGCAGTAAAGGCCAAGAAAGAATACTTGTTTATGAATACATGGCAAACAATAGCCTTGACAGATTCTTATTTGGTGACAAAGAAGGTTCCCTCAATTGGAAACAACGGTATGATATAATTTTAGGCACAGCAAGGGGACTGACCTATCTGCATGAGGAATTCCACGTTTCTATCATACATAGGGATATCAAGAGTGGCAATATCCTCTTGGATCATGAATTTCAACCCAAAATTTCTGATTTTGGGTTAGCAAGGCTTTTACCTGGGGACAAATCACATCTTAAAACAAGATTTGCAGGAACATTGGGATACACAGCACCTGAGTATGCAATTCATGGTCAACTATCAGAAAAAGCTGACACCTACAGCTATGGTATTGTAGTCTTAGAAATAATAAGCGGTCAAAAGAGTACCGAGCTAAGGGTTGATGATGATGGTAGTCATGAATACCTTCTTCGACGAGCATGGAAACTGTATGAAGAAGGCATGCACTTGGAGTTAGTGGATAAAAGCTTAAACTCTAATGAGTATGATGTAGAAGGAGTGAAGAAAATCATAGAAATAGCTTTGTTGTGCACTCAAGCATCAGCTGCAACGAGGCCAACAATGTCTGAAGTAGTAGTTCTACTCAACAGCAAGAACTTTATCGAGCATGTGAGACCTTCAATACCAGTGTTTGTTGAAAGAAATCTAAGGCCCCAAGGAGATGTTCCTAACTCAATCACTTCCTCCAATGCTACTGTCTCTACTTCTGATGCATCTGCTAGATGA 1926 0.4148 MKMFVQVALFSSTLLCIWWSSDADPQTLLLNAGCSRYNATNLNRFLANLNATFSELREKISSENMQFGTVTKTSGGALSYTMFQCRNYLSKNDCLSCFATASAQLRNCSTASGARVTYDGCFFRYESEGFYDQSTDLGNGVSCGNQTAHERDVFSAIGRQVLMNLQIATPKIKGFFAATKTPVVGVGAIYAIAQCIQTITPSGCSDCLRVDYNNMHTCLPNTNGRAYDAGCFMRYSTTPFFADNQTIDINPYLKQGGSSKKWAIIGGVVGGIVLVILLSLFVWCRRSQKPKRVSRGNILGATELRGPVNYKYNDLKDATKNFSDENKLGEGGFGDVYKGTLKNGKVVAVKKLILGKSDKTDDDFESEVKLISNVHHRNLVRLLGCCSKGQERILVYEYMANNSLDRFLFGDKEGSLNWKQRYDIILGTARGLTYLHEEFHVSIIHRDIKSGNILLDHEFQPKISDFGLARLLPGDKSHLKTRFAGTLGYTAPEYAIHGQLSEKADTYSYGIVVLEIISGQKSTELRVDDDGSHEYLLRRAWKLYEEGMHLELVDKSLNSNEYDVEGVKKIIEIALLCTQASAATRPTMSEVVVLLNSKNFIEHVRPSIPVFVERNLRPQGDVPNSITSSNATVSTSDASAR* 642
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr10g1947 641 Gene3D - 26 130 IPR038408 -
Apr10g1947 641 Gene3D - 140 240 IPR038408 -
Apr10g1947 641 PANTHER CYSTEINE-RICH RLK (RECEPTOR-LIKE KINASE) PROTEIN 20 635 - -
Apr10g1947 641 ProSiteProfiles Gnk2-homologous domain profile. 136 240 IPR002902 -
Apr10g1947 641 Coils Coil 46 66 - -
Apr10g1947 641 Gene3D Transferase(Phosphotransferase) domain 1 399 605 - -
Apr10g1947 641 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 20 635 - -
Apr10g1947 641 CDD STKc_IRAK 328 596 - -
Apr10g1947 641 ProSiteProfiles Protein kinase domain profile. 322 601 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr10g1947 641 ProSiteProfiles Gnk2-homologous domain profile. 27 130 IPR002902 -
Apr10g1947 641 Gene3D Phosphorylase Kinase; domain 1 286 398 - -
Apr10g1947 641 ProSitePatterns Serine/Threonine protein kinases active-site signature. 443 455 IPR008271 GO:0004672|GO:0006468
Apr10g1947 641 Pfam Salt stress response/antifungal 37 127 IPR002902 -
Apr10g1947 641 Pfam Salt stress response/antifungal 146 237 IPR002902 -
Apr10g1947 641 SUPERFAMILY Protein kinase-like (PK-like) 307 611 IPR011009 -
Apr10g1947 641 SMART serkin_6 322 601 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr10g1947 641 MobiDBLite consensus disorder prediction 620 641 - -
Apr10g1947 641 ProSitePatterns Protein kinases ATP-binding region signature. 328 351 IPR017441 GO:0005524
Apr10g1947 641 MobiDBLite consensus disorder prediction 619 641 - -
Apr10g1947 641 Coils Coil 640 641 - -
Apr10g1947 641 Pfam Protein kinase domain 323 591 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr10g1947 Apr-Chr10 32411911 32416614 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr10g1947 7 641 Receptor kinase-like Gene Family AT1G70520 36.963 1.65e-125 384
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Apr10g1947 Pkinase 4.3e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr10g1947 - - gmx:100801131 877.47