Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr10g1945 ATGAAGCTTTCAACATCAGGGTTGGGTCAGCAGGGACATGAAGGGGAGAAGAAGTGTCTGAATTCTGAGCTATGGCATGCATGCGCGGGGCCCTTAGTGTCCCTACCAAATGCAGGGACTCGTGTGGTTTACTTCCCTCAGGGTCATAGTGAGCAGGTTGCTGCCACAACGAACAGAGAAATTGATGGACACATACCAAATTATCCTAGTTTGCCACCCCAGTTGATTTGCCAACTTCACAATGTGACTATGCATGCAGATATTGAAACAGATGAAGTATATGCTCAAATGACGTTGCAGCCATTGACTCCGCAAGAACAGAAGGATACCTTTCTTCCCATGGAATTGGGTATTCCGAGTAAGCAGCCATCAAATTATTTTTGCAAGACATTAACAGCCAGTGACACCAGCACTCATGGGGGATTCTCTGTTCCTCGTCGTGCAGCTGAGAAAGTTTTCCCTCCACTGGATTTCTCACAGCAACCACCAGCACAGGAACTAATAGCTAGGGATCTCCATGATGTTGAATGGAAATTTCGACATATTTTTCGGGGACAGCCAAAACGACACCTTCTTACTACAGGCTGGAGTATATTTGTTAGTGCCAAGAGACTTGTGGCTGGAGATTCTGTGCTTTTCATATGGAATGAGAAGAATCAACTTCTTTTGGGAATACGTCGTGCCAATCGACCACAAACTGTAATGCCATCATCAGTTCTATCCAGTGATAGTATGCACATTGGACTTCTTGCAGCTGCAGCCCATGCTGCAGCAACTAATAGCTGTTTTACTGTGTTCTATAATCCAAGGGCTAGTCCATCTGAGTTTGTCATACCGCTTTCAAAATATATCAAAGCTGTGTACCATACCCGTATTTCTGTTGGAATGCGTTTCAGGATGCTTTTTGAGACTGAAGAGTCAAGTGTTCGCAGGTACATGGGTACTATAACTGGCATAAGTGATCTGGATTCTGTTCGGTGGCCGAATTCTCATTGGCGCTCTGTCAAGGTTGGTTGGGATGAATCAACAGCTGGAGAGAGACAACCACGAGTGTCATTGTGGGAAATTGAGCCATTAACAACATTCCCGATGTATCCATCATTATTTCCCCTCAGATTGAAACGTCCATGGCATCCTGGGTCCTCATCTTTGAATGATGGCAGAGATGAAGCAAATGGGCTAATGTGGTTGAGAGGTGGGCCTGTAGACCAAGGACTCAATTCCATTAATTTTCAAGGAGCTGGTATGTTGCCCTGGATGCAGCAGAGATTGGATCCAACTTTACTAGGAGGAAATGATCCGAATCAACAGTACCAAGCCATGTTGGCAGCTGGTTTGCAGAACCTAGGTAGTGGATATCACATGAAGCAACAAATGATGAGTTTTCAACAGCCTTTCCCTTATCTTCAACAATCAGGAAACAACAATTCTCCCTTGCAACTTCAGCAGCAGCAAGCTATTCAACAATCGGGGTCTTCTAATATTCTGCAACCACATGCCCAAATAATGGGAGAAAACCTGTCTCAGCACCTCCTTCAGAAACCACATAACAACCAAGAAGTCCAAACACAACAGCAGCAACATACTTATCAAGAAACACTTCTAATTCCGAGTGATCAGCTCCATCAGAGACAACACTCAAGCATTCCTTCACCATCATATTCAAAACCTGATTTCTTGGATTCGAGCATAAAGTTCCCTACATCAGTTTCCCCTGGACAAAATGTGCTTAGTTCACTTTGTCCTGAAGGAAGTGGCAGTCTCTTGAATTTATCTAGAAGCAGTCAGTCCTTGCTGACTGAACAGTTACCCCAACAATCATGGACTCCAAAATATGCACCTTTGCAGGTCAACGCCTTTGGCAGCACTGTGCCACATGCACAATATTCTGGAAAAGATTCTGCAATGGTGCTACCACATTGTAATTCAGATGCTCAAAATCCAACTCTCTTTGGTGTCAATATTGATTCATCTGGCCTTCTGCTCCCCACCACTGTTCCTGGTTACACCACTTCATCAGCTGATACCGATTCATCAACAATGCCATTAGCGGAGTCTGGTTTTCAGGGTTCTCTATATGCTTGCATGCAAGATTCATCTGAGTTGTTGCGAAGTGCAGGGCATGTTGACCCGCATAACCAGACTCAAACCTTTGTAAAGGTTTACAAATCAGGGTCAGTTGGGCGCTCACTTGACATCTCTCGGTTCAGCAGCTATCATGAACTGCGGGAGGAGTTGGCTCAGATGTTTGGAATTGAGGGGAAGTTAGAAGACCCTCTTAGATCAGGCTGGCAGCTTGTATTTGTCGACAGGGAGAACGATGTTCTTCTCCTTGGAGACGATCCGTGGGAATCATTCGTCAATAACGTTTGGTATATCAAAATACTTTCACCTGAAGATATTCAGAAGATGGGAGAACAAGCGGTAGAATCCCTTGCTCTTGGTTCCGGACAAAGGCTAAATGGCACTGGTGCCGAATCTCAGGACATTGTTTCTGGACCACCATCAATTGGCTCACTTGAATACTGA 2529 0.448 MKLSTSGLGQQGHEGEKKCLNSELWHACAGPLVSLPNAGTRVVYFPQGHSEQVAATTNREIDGHIPNYPSLPPQLICQLHNVTMHADIETDEVYAQMTLQPLTPQEQKDTFLPMELGIPSKQPSNYFCKTLTASDTSTHGGFSVPRRAAEKVFPPLDFSQQPPAQELIARDLHDVEWKFRHIFRGQPKRHLLTTGWSIFVSAKRLVAGDSVLFIWNEKNQLLLGIRRANRPQTVMPSSVLSSDSMHIGLLAAAAHAAATNSCFTVFYNPRASPSEFVIPLSKYIKAVYHTRISVGMRFRMLFETEESSVRRYMGTITGISDLDSVRWPNSHWRSVKVGWDESTAGERQPRVSLWEIEPLTTFPMYPSLFPLRLKRPWHPGSSSLNDGRDEANGLMWLRGGPVDQGLNSINFQGAGMLPWMQQRLDPTLLGGNDPNQQYQAMLAAGLQNLGSGYHMKQQMMSFQQPFPYLQQSGNNNSPLQLQQQQAIQQSGSSNILQPHAQIMGENLSQHLLQKPHNNQEVQTQQQQHTYQETLLIPSDQLHQRQHSSIPSPSYSKPDFLDSSIKFPTSVSPGQNVLSSLCPEGSGSLLNLSRSSQSLLTEQLPQQSWTPKYAPLQVNAFGSTVPHAQYSGKDSAMVLPHCNSDAQNPTLFGVNIDSSGLLLPTTVPGYTTSSADTDSSTMPLAESGFQGSLYACMQDSSELLRSAGHVDPHNQTQTFVKVYKSGSVGRSLDISRFSSYHELREELAQMFGIEGKLEDPLRSGWQLVFVDRENDVLLLGDDPWESFVNNVWYIKILSPEDIQKMGEQAVESLALGSGQRLNGTGAESQDIVSGPPSIGSLEY* 843
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr10g1945 842 Pfam B3 DNA binding domain 127 228 IPR003340 GO:0003677
Apr10g1945 842 Gene3D - 291 363 - -
Apr10g1945 842 SMART B3_2 127 229 IPR003340 GO:0003677
Apr10g1945 842 SUPERFAMILY DNA-binding pseudobarrel domain 111 256 IPR015300 -
Apr10g1945 842 MobiDBLite consensus disorder prediction 820 834 - -
Apr10g1945 842 Pfam AUX/IAA family 713 800 IPR033389 -
Apr10g1945 842 Pfam Auxin response factor 253 336 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Apr10g1945 842 ProSiteProfiles PB1 domain profile. 716 800 IPR000270 GO:0005515
Apr10g1945 842 SUPERFAMILY CAD & PB1 domains 710 790 - -
Apr10g1945 842 MobiDBLite consensus disorder prediction 467 492 - -
Apr10g1945 842 MobiDBLite consensus disorder prediction 820 842 - -
Apr10g1945 842 Gene3D - 125 228 IPR015300 -
Apr10g1945 842 CDD B3_DNA 126 227 IPR003340 GO:0003677
Apr10g1945 842 Gene3D - 712 805 - -
Apr10g1945 842 ProSiteProfiles B3 DNA-binding domain profile. 127 229 IPR003340 GO:0003677
Apr10g1945 842 PANTHER AUXIN RESPONSE FACTOR 1 827 - -
Apr10g1945 842 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 1 827 IPR044835 GO:0003677|GO:0006355|GO:0009725
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr10g1945 Apr-Chr10 32387094 32395321 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr10g1945 97 808 B3 DNA Binding Superfamily AT5G37020 68.785 0.0 922
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Apr10g1945 AUX_IAA 1e-07 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr10g1945 - - gmx:100784373 1533.08
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr10g1945 10 32387094 32395321 Apr9g1257 9 22202824 22211681 PCT