Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr10g1938 ATGCGTGGAAGGGAAGGAGAGAACAAACCTCCGAGAATTACTCCGCCGAACGACCTCCGATGCCGGCGGAGCGACGGCAAGTCATGGCGGTGCTACCACTGGAGGATTCACGGCCAGAGCTACTGCGAGGAACATTACCTTTCATACAGAGCTCGGTCCTTTCACGTTAACTACCATGAACAAAGGAAACCTAAAGCTTCTTCTTCTTCTTCTTCCGCTTCCGTGCAAAGTGACAATGAGAAGAAGAAGAAGAAGAAGAAGAATATTTCGAAGAGGCTTCGAGAACAAGACGAAGCGAGTGTTCAGGAGAAAAACAGAAGCAAGAAGAAGATGAAACTTAAAGCGGAACAAGAATCACCGAGGGAGGAACTGGACAGGAAATCCAGAAGCAGAGAGAAGATTAGGAGATTGCTTCTTCAGTTGGATGAAGATTTCGATACCGAAGATGATGAAAAACCAGCCACAACAACGAGGACCAAGTCTTCTTCCTCCAAATCCAACGATGCAAAGCTAAGTGTCTCTCTCTCTCAGTCTCAGATGTGTCATCAGTGTCAGAAGAGTGATAGGACCGTTGTTCGATGCCGGAAATGCAGCGCCAAACGATTCTGCGTTCCTTGCATTCGGAGATGGTATCCGCTAATGTCTGAGGAGGAAATAGCAGAATCTTGTCCATATTGTCAAGGCAATTGTAACTGCAAGGCATGTTTACGTAGAAAAGATGCAATTGCGGATTCTCAAGATTTAGGGATGCCTCAAAATATAGATGAAAAGATTCGACATTTGAAGCATTTGGTGAGAGCATTATATCCTTTCCTAGAACAATTCAATCATGAACAGCAGTTAGAATTGGAGATGGAAGCAAAAACTAAAGGGTTATTGCTTTCAGATGTAGAAGTAAACCAAATTGTTTGTTCCAAATATGAACGTATTTATTGCAACAATTGCAAAACCTCTATAGTTGATTTTCATAAGAGCTGCCCAAACTGTTCGTATGATCTTTGCCTTGCTTGTTGCCGGGAAATTCGTGGTAATATCTGCCAAGAGGAAATAGTTGAGCAATGTATTGATGTTTCCAATGCTCATTCGGATAGTGGAGAACCTTTACACCAGCACTCATGCAAGAAAGAATCATCAGGCATTTGTCATGAATCAAGCTCTAAGAATTCTATGAGACCAAAAAATGTGTGGAGGGCAATAAAAAATGGTGCCATCCCTTGTCCACCAACGGATAATGGTGGTTGTGGATATGAATATCTTGAGCTGAAGTGTTTATTTCCACAAAATTGGATTTCAAAGTTAAGGGAAAAGGTGAAAAGTTTAGTTGAAGTACGTGGCTTGGAAAATATGCCCACAGTTTCTACACGGTGTAATTTTTGCTTCAAATCAAGTGATGAAATTGACTCTGGCAACAGGAAGTTGCGAAAAGCTGCCTCTCGAGAAGCATCGAGTGACAACTATTTGTATTGTCCTTCAGCAAGTGATGTCAGATGTGGGGATCTGGAACATTTTCAGGGCCATTGGATTAAGGGAGAACCAGTTATTGTTAGGGATGCTCTTGAGTTAACCTCTGGCTTAAGCTGGGAGCCAATGGTAATGTGGCGTGCAATGCGTGAATTGACTAATCAGGGTTCCAAACATCTGAATGTGAAAGCAGTTGACTGCCTAGATTGGTGTGAGGTTGAAATAAATATCCATCAATTTTTCAAGGGATACTCAGATGGTCGTGCACATCGTAACTCCTGGCCTGAGATGCTCAAGCTCAAAGATTGGCCTCCGTCCAATCTATTTGAGAAGAGGTTACCACGTCATTGTATGGAGTTTATTAGTGCCTTACCATACAAAGAGTATACACATCCTCGCTCTGGTTTTCTTAACATGGCCACAAAGCTGCCAGAAAATTATTTGAAACCTGACTTGGGGCCCAAGACATACATAGCATATGGTTTTGCTGAAGAGCTTGGACGTGGAGATTCTGTGACCAAGCTTCATTGTGACATGTCAGATGCGGTAAATATCTTGACACATACAGAAGATGTGAGCTTCACTTCTAAACATCTTACCAAAATAGAGATGTTGAAACAACAATATGCTACTCAAGACCAAAGTGAACTTTTTGAGGTTTTACAGGATGATAATTCTGCGGTAAAGTGCAAATCAACACTAGAAGAAGAAAATATTTCATTGCAGGCAGTAGATGAATCAGTTATGAATGGGTCTTCCCTTATTCAAATGTCAAAAATGGAAAATGATGAGTTCTACAGAAAGCATGCAACTGCTAAACCACTAAATGATAGGATTCTTGAAAAAAACAGCGAGGCTGAGGCTTCTGAAGGAGAACCAACTTTTACACCTGGAGTAGAAGTTCTAGTACGCAATAGTGCTCTAGGGCTGCATGAGAATATTGGCATAAATTCCTCCAGTGCTGTAACTGCTAATAATGACGAGATCAGCAAGTGTGATGTTAACAAGATGGGTATTGAAGCTAAAAAGAGATGGAGCAGCCCTATGGACGTTAAGGTTGGAGATGACGAGGAAGAGTTTCTCTCTTCAGTTAGTAGGACAAGAAATGATGAATTGCAGGATGACATTATTAACAAAAAAGGAGCAAATTCAGGAATTTTACGGGAAAAGGAAACTGGTGAAATGAAAAAGTCTAAAGAAGGGAATGTAGTTATTGTGAGTGAAAATGTAGTCAAGTCACTGCATGATTTAGATATGAAATCAGAATTATATGCCATTGTGCCTACTTCAACAAATGAGGTGCTGCAGCAGGATGCAGAATGCCTTAGTCAACCAGTGGATTCTGGAAATAAGCATAGTGAACAAGACTTAGCTAAGGGAGGTGCTGTCTGGGATATTTTTCGGAGACAAGATGTGCACAAGCTTGAGGAATACCTTAGAAAGCATTGTAAGGAATTCAGGCATCTCCATTGCTCTAAAGTGGAGAAGGTTTTTCACCCAATTCATGATCAAGTTTTTTATCTGACTTCTCATCATAAAAGGAAACTCAAGGAAGAATTTGGCGTTGAACCTTGGACTTTTGTACAAAACCTTGGTGAGGCTGTTTTTATTCCGGCTGGGTGTCCCCATCAAGTTAGAAACTTAAAGTCATGCATAAAGGTTGCTTTAGATTTTGTCTCTCCTGAAAATGTCCAAGAGTGTATTCGTCTGACTGAGGAATTTCGTTCTCTTCCCCCAAGCCATAAAGCAAATGAAGATAAACTTGGGGTGAAGAAAATGTGTCTCCATGCATTAAGCATGGCTGCAGACAATTTGGAGGAGCTCGTAGGATGA 3294 0.4123 MRGREGENKPPRITPPNDLRCRRSDGKSWRCYHWRIHGQSYCEEHYLSYRARSFHVNYHEQRKPKASSSSSSASVQSDNEKKKKKKKNISKRLREQDEASVQEKNRSKKKMKLKAEQESPREELDRKSRSREKIRRLLLQLDEDFDTEDDEKPATTTRTKSSSSKSNDAKLSVSLSQSQMCHQCQKSDRTVVRCRKCSAKRFCVPCIRRWYPLMSEEEIAESCPYCQGNCNCKACLRRKDAIADSQDLGMPQNIDEKIRHLKHLVRALYPFLEQFNHEQQLELEMEAKTKGLLLSDVEVNQIVCSKYERIYCNNCKTSIVDFHKSCPNCSYDLCLACCREIRGNICQEEIVEQCIDVSNAHSDSGEPLHQHSCKKESSGICHESSSKNSMRPKNVWRAIKNGAIPCPPTDNGGCGYEYLELKCLFPQNWISKLREKVKSLVEVRGLENMPTVSTRCNFCFKSSDEIDSGNRKLRKAASREASSDNYLYCPSASDVRCGDLEHFQGHWIKGEPVIVRDALELTSGLSWEPMVMWRAMRELTNQGSKHLNVKAVDCLDWCEVEINIHQFFKGYSDGRAHRNSWPEMLKLKDWPPSNLFEKRLPRHCMEFISALPYKEYTHPRSGFLNMATKLPENYLKPDLGPKTYIAYGFAEELGRGDSVTKLHCDMSDAVNILTHTEDVSFTSKHLTKIEMLKQQYATQDQSELFEVLQDDNSAVKCKSTLEEENISLQAVDESVMNGSSLIQMSKMENDEFYRKHATAKPLNDRILEKNSEAEASEGEPTFTPGVEVLVRNSALGLHENIGINSSSAVTANNDEISKCDVNKMGIEAKKRWSSPMDVKVGDDEEEFLSSVSRTRNDELQDDIINKKGANSGILREKETGEMKKSKEGNVVIVSENVVKSLHDLDMKSELYAIVPTSTNEVLQQDAECLSQPVDSGNKHSEQDLAKGGAVWDIFRRQDVHKLEEYLRKHCKEFRHLHCSKVEKVFHPIHDQVFYLTSHHKRKLKEEFGVEPWTFVQNLGEAVFIPAGCPHQVRNLKSCIKVALDFVSPENVQECIRLTEEFRSLPPSHKANEDKLGVKKMCLHALSMAADNLEELVG* 1098
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr10g1938 1097 Pfam JmjC domain, hydroxylase 935 1045 IPR003347 -
Apr10g1938 1097 Pfam WRC 16 53 IPR014977 -
Apr10g1938 1097 MobiDBLite consensus disorder prediction 157 171 - -
Apr10g1938 1097 MobiDBLite consensus disorder prediction 367 381 - -
Apr10g1938 1097 CDD cupin_RmlC-like 985 1046 - -
Apr10g1938 1097 Gene3D Cupin 486 730 - -
Apr10g1938 1097 Gene3D Cupin 886 1071 - -
Apr10g1938 1097 MobiDBLite consensus disorder prediction 91 129 - -
Apr10g1938 1097 SUPERFAMILY Clavaminate synthase-like 498 1093 - -
Apr10g1938 1097 ProSiteProfiles Zinc finger RING-type profile. 181 227 IPR001841 -
Apr10g1938 1097 SMART cupin_9 600 1062 IPR003347 -
Apr10g1938 1097 MobiDBLite consensus disorder prediction 60 129 - -
Apr10g1938 1097 MobiDBLite consensus disorder prediction 1 24 - -
Apr10g1938 1097 Coils Coil 79 99 - -
Apr10g1938 1097 ProSiteProfiles JmjC domain profile. 619 1062 IPR003347 -
Apr10g1938 1097 ProSiteProfiles WRC domain profile. 15 61 IPR014977 -
Apr10g1938 1097 MobiDBLite consensus disorder prediction 366 389 - -
Apr10g1938 1097 PANTHER JMJC DOMAIN-CONTAINING HISTONE DEMETHYLATION PROTEIN 10 1095 IPR045109 GO:0032454|GO:0033169
Apr10g1938 1097 MobiDBLite consensus disorder prediction 145 171 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr10g1938 Apr-Chr10 32353182 32363248 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Apr10g1938 JmjC 1.1e-14 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr10g1938 K15601 - gmx:100808936 1560.43