Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Apr10g1926 | ATGGACACTATGCCTTCCCTTCTCAAGAAATACTTTGGGTTTTCAGATTTTCGGCCTTATCAGAAAGAAGTTATTGAGAAAATTATTGAGAAAAGGGATTGTTTGGTAGTCATGGCTACTGGTAGTGGGAAGTCCTTGTGCTATCAGGTACCTCCCTTGGTTGTTAACAAGACTGGGATAGTTGTAAGCCCTCTGATATCATTGATGCAAGACCAGGTCATGGCTTTGAAACAACGGGGCATTAAAGCTGAATATCTTGGAAGTGCTCAGAAGGATTCCACTGTACACTCTAAAGCTGAACGTGGTCAATTTGACATTCTGTTCATGACTCCTGAAAAGGCATGCACAATTCCTACCAGTTTCTGGTCCAACTTGCTAAAGGTTGGAATTAGTCATTTTTCTGTTGATGAAGCCCATTGTATATCAGAATGGGGACATGATTTTAGGGTGGAATACAAGCATTTAGATAAGTTACGTGAGGTTCTGTTAGATGTTCCTTTTGTTGGTCTAACTGCCACTGCTACTGAAAAGGTTCAATTTGACATCATCAGTTCCCTGAAGATGAATAATCCTTATGTTATGGTTGGTTCATTTGATCGAGCAAATCTTTTCTATGGTGTCAAACTATTTAACCGCGGACAAGCTTTTATTGATGAGCTTGTGCTAGGAATTTCAAAAGAAGTTGCTAGTGGTGGTTCAACTATAATTTACTGCACAACAATCAAAGATGTAGAGCAGATATTCAAGACACTTGCAGAAGCAGGTATGGAGGCAGGAATGTACCATGGCCAAATGAATGCAGAAGCTCGAGAGGAGTCTCATAGATTATTTGTTAGAGATGAACTGAAAATCATGGTGGCCACCATTGCCTTTGGCATGGGCATAGATAAACCTAACATAAGGCAAGTGATTCATTATGGTTGCCCTAAGAGTGTAGAGTCCTACTACCAGGAAAGTGGGCGATGTGGTAGAGATGGTATAGCTTCTGTTTGTTGGCTTTACTACACAAGAAGTGACTTTGCAAAGGGAGATTTTTATTGTCGAGATTTAAAAACAGAAAAGCAAAGAAAAGCTGTCATGGAGTCATTGCTGGCTGCTGAACGCTACTGTATGCTGACAACTTGCAGAAGAAAGTTCTTGCTTGAATACTTTGGGGAAAATTTTTCAGCTGATAGATGTGGAAACTGTGATAACTGCAAAGTTTCAAAGAAGGAGCGTGACTTGTCAAGAGAGGCATTTCTTCTGATGGCTTGCATTCATTCATGCAATGGAAAATGGGGCCTCAATATGCCCATTGACATCCTGCGTGGGTCTCGAGCCAAGAAAATTCTTGATGCCCAGTTTGACAAGCTTCCGGTTCATGGACTGGGGAAAACTTATCCAGCAAATTGGTGGAAAGCTCTTGGACATCAATTGATTTCTCAAGGTTATTTGAAGGAGATTGTTAGTGAGATGTATAGAACTATAAGTGTCAATTCAAAAGGAGAGCAATTTTTGGCCTCTTCTAGACCAGATTATCAACCTCCCTTGGTTTTGTCATTGACTGCTGAAATGCTTGGAGAAGAGGAAAATAGAAGCACGCAAGAATTCAAAACTTTAGCCTCTTCAACACCAGAGGGTTTTTCAGAGGCTGAGGGACAGCTCTACCAAATGCTTTTAGAAGAAAGATTAAAGCTGGCAAGAAGTGTTGGAACAGCTCCATATGCTCTATGTGGTGATCAAACAATCAGAAAAATTGCTTTGACAAGGCCATCCACAAAAGCAAGACTCGCAAACATTGATGGTGTGAATCAGCACCTAGTAACAAAATATGGATATCATTTTCTTCAAGTTATTAAGAAACTGTCTCAAGGATTAAAGCTATCATTGGATGGGGAAGCAAGTTTGGTAACTAATGAAGTAAGGAAAGTATCTCCAGTAGCCAACAAATTGAAGTTGACATCAGCAAAGTTTGATGCATGGAAAATGTGGCAAGAAGATGGTCGTTCTATTCCAGAGATTGCTAACTATCCAGGTAGATCGGCTCCAATAAAGGAACAAACTGTTGTTGAATATCTGCTGGAAGCTGCTCAAGAAGGCTTACCTTTCAATTGGACTAGATTCTGTGAGATGATAGGACTGACCCAAGAGATCATATCAGAAATTCAGAATGCTATTTCAAAGGTTGGATCAGACAAGCTGAAGCCTATAAAAAATGAGTTGCCAGAAAATGTAAATTATCAGCATATCAAGACATTTTTGTTGATGCGAAAGTCTGGAATATCCTTAGAAGAAATTCAATCTGGAAGTCACCCGACTGGGAAAGATGAACCTGTAAATAATGCTTCAACTTTGTCACACCCTACCTTAGAAACACACTGCACAGAAAAGCAACATGAAGATGACATTTCTGCCAGAAGTTTGAGGGAAAAATGTGACTTAAAAATCAATGAGGTTCCTTCTCCATCTCTCAATGGTTGCCAGGTACAGAAGCATGCATTAGCCTCTGAGGGTGAATTCACAAGCAAACGACAAAAACTGTGTGAAACAGAGAAAATAAATCTAACTAAATTGAAAGCTACTGAGTGTTCTGTTGTAGAGTGGTTGAAGAACCTTGATGAAGGGGCTTCTTTGACTGATATTTTGGAGTACTTCAAAGGATCCAATGAAGACTCCGTGATTGAATTGTTGAATTGCCTTGAATGTGACTTTTCAATATACAAGAAAGGCAATATGTATAGGGCTATGTAA | 2730 | 0.3971 | MDTMPSLLKKYFGFSDFRPYQKEVIEKIIEKRDCLVVMATGSGKSLCYQVPPLVVNKTGIVVSPLISLMQDQVMALKQRGIKAEYLGSAQKDSTVHSKAERGQFDILFMTPEKACTIPTSFWSNLLKVGISHFSVDEAHCISEWGHDFRVEYKHLDKLREVLLDVPFVGLTATATEKVQFDIISSLKMNNPYVMVGSFDRANLFYGVKLFNRGQAFIDELVLGISKEVASGGSTIIYCTTIKDVEQIFKTLAEAGMEAGMYHGQMNAEAREESHRLFVRDELKIMVATIAFGMGIDKPNIRQVIHYGCPKSVESYYQESGRCGRDGIASVCWLYYTRSDFAKGDFYCRDLKTEKQRKAVMESLLAAERYCMLTTCRRKFLLEYFGENFSADRCGNCDNCKVSKKERDLSREAFLLMACIHSCNGKWGLNMPIDILRGSRAKKILDAQFDKLPVHGLGKTYPANWWKALGHQLISQGYLKEIVSEMYRTISVNSKGEQFLASSRPDYQPPLVLSLTAEMLGEEENRSTQEFKTLASSTPEGFSEAEGQLYQMLLEERLKLARSVGTAPYALCGDQTIRKIALTRPSTKARLANIDGVNQHLVTKYGYHFLQVIKKLSQGLKLSLDGEASLVTNEVRKVSPVANKLKLTSAKFDAWKMWQEDGRSIPEIANYPGRSAPIKEQTVVEYLLEAAQEGLPFNWTRFCEMIGLTQEIISEIQNAISKVGSDKLKPIKNELPENVNYQHIKTFLLMRKSGISLEEIQSGSHPTGKDEPVNNASTLSHPTLETHCTEKQHEDDISARSLREKCDLKINEVPSPSLNGCQVQKHALASEGEFTSKRQKLCETEKINLTKLKATECSVVEWLKNLDEGASLTDILEYFKGSNEDSVIELLNCLECDFSIYKKGNMYRAM* | 910 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Apr10g1926 | 909 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 57 | 340 | IPR027417 | - | |
Apr10g1926 | 909 | ProSiteProfiles | Superfamilies 1 and 2 helicase C-terminal domain profile. | 216 | 371 | IPR001650 | - | |
Apr10g1926 | 909 | SUPERFAMILY | "Winged helix" DNA-binding domain | 398 | 504 | IPR036390 | - | |
Apr10g1926 | 909 | Gene3D | - | 200 | 401 | IPR027417 | - | |
Apr10g1926 | 909 | PANTHER | DNA HELICASE RECQ FAMILY MEMBER | 4 | 740 | - | - | |
Apr10g1926 | 909 | Pfam | DEAD/DEAH box helicase | 19 | 178 | IPR011545 | GO:0003676|GO:0005524 | |
Apr10g1926 | 909 | ProSiteProfiles | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 25 | 192 | IPR014001 | - | |
Apr10g1926 | 909 | Gene3D | - | 1 | 198 | IPR027417 | - | |
Apr10g1926 | 909 | SUPERFAMILY | HRDC-like | 540 | 616 | IPR010997 | GO:0000166|GO:0044237 | |
Apr10g1926 | 909 | Pfam | RecQ zinc-binding | 343 | 400 | IPR032284 | - | |
Apr10g1926 | 909 | SMART | helicmild6 | 245 | 326 | IPR001650 | - | |
Apr10g1926 | 909 | PANTHER | WERNER SYNDROME ATP-DEPENDENT HELICASE | 4 | 740 | - | - | |
Apr10g1926 | 909 | SMART | ultradead3 | 13 | 210 | IPR014001 | - | |
Apr10g1926 | 909 | MobiDBLite | consensus disorder prediction | 759 | 784 | - | - | |
Apr10g1926 | 909 | TIGRFAM | recQ_fam: ATP-dependent DNA helicase, RecQ family | 7 | 458 | IPR004589 | GO:0004386|GO:0006310 | |
Apr10g1926 | 909 | Gene3D | - | 402 | 527 | IPR036388 | - | |
Apr10g1926 | 909 | MobiDBLite | consensus disorder prediction | 759 | 793 | - | - | |
Apr10g1926 | 909 | Pfam | RQC domain | 404 | 501 | IPR018982 | GO:0006260|GO:0006281|GO:0043138 | |
Apr10g1926 | 909 | Pfam | Helix-turn-helix domain | 653 | 747 | IPR029491 | - | |
Apr10g1926 | 909 | Pfam | Helicase conserved C-terminal domain | 221 | 325 | IPR001650 | - | |
Apr10g1926 | 909 | SMART | RQC_2 | 407 | 511 | IPR018982 | GO:0006260|GO:0006281|GO:0043138 | |
Apr10g1926 | 909 | Gene3D | HRDC domain | 541 | 624 | IPR044876 | - | |
Apr10g1926 | 909 | SMART | hrdc7 | 542 | 622 | IPR002121 | GO:0003676 | |
Apr10g1926 | 909 | CDD | DEXHc_RecQ | 6 | 199 | - | - | |
Apr10g1926 | 909 | Pfam | HRDC domain | 547 | 612 | IPR002121 | GO:0003676 | |
Apr10g1926 | 909 | ProSiteProfiles | HRDC domain profile. | 542 | 622 | IPR002121 | GO:0003676 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Apr10g1926 | Apr-Chr10 | 32258863 | 32269555 | Transposed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Apr10g1926 | 234 | 326 | Eukaryotic Initiation Factors Gene Family | AT5G11170 | 30.108 | 1.46e-07 | 52.8 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Apr10g1926 | K03654 | - | gmx:100797777 | 1510.35 |