Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr10g1926 ATGGACACTATGCCTTCCCTTCTCAAGAAATACTTTGGGTTTTCAGATTTTCGGCCTTATCAGAAAGAAGTTATTGAGAAAATTATTGAGAAAAGGGATTGTTTGGTAGTCATGGCTACTGGTAGTGGGAAGTCCTTGTGCTATCAGGTACCTCCCTTGGTTGTTAACAAGACTGGGATAGTTGTAAGCCCTCTGATATCATTGATGCAAGACCAGGTCATGGCTTTGAAACAACGGGGCATTAAAGCTGAATATCTTGGAAGTGCTCAGAAGGATTCCACTGTACACTCTAAAGCTGAACGTGGTCAATTTGACATTCTGTTCATGACTCCTGAAAAGGCATGCACAATTCCTACCAGTTTCTGGTCCAACTTGCTAAAGGTTGGAATTAGTCATTTTTCTGTTGATGAAGCCCATTGTATATCAGAATGGGGACATGATTTTAGGGTGGAATACAAGCATTTAGATAAGTTACGTGAGGTTCTGTTAGATGTTCCTTTTGTTGGTCTAACTGCCACTGCTACTGAAAAGGTTCAATTTGACATCATCAGTTCCCTGAAGATGAATAATCCTTATGTTATGGTTGGTTCATTTGATCGAGCAAATCTTTTCTATGGTGTCAAACTATTTAACCGCGGACAAGCTTTTATTGATGAGCTTGTGCTAGGAATTTCAAAAGAAGTTGCTAGTGGTGGTTCAACTATAATTTACTGCACAACAATCAAAGATGTAGAGCAGATATTCAAGACACTTGCAGAAGCAGGTATGGAGGCAGGAATGTACCATGGCCAAATGAATGCAGAAGCTCGAGAGGAGTCTCATAGATTATTTGTTAGAGATGAACTGAAAATCATGGTGGCCACCATTGCCTTTGGCATGGGCATAGATAAACCTAACATAAGGCAAGTGATTCATTATGGTTGCCCTAAGAGTGTAGAGTCCTACTACCAGGAAAGTGGGCGATGTGGTAGAGATGGTATAGCTTCTGTTTGTTGGCTTTACTACACAAGAAGTGACTTTGCAAAGGGAGATTTTTATTGTCGAGATTTAAAAACAGAAAAGCAAAGAAAAGCTGTCATGGAGTCATTGCTGGCTGCTGAACGCTACTGTATGCTGACAACTTGCAGAAGAAAGTTCTTGCTTGAATACTTTGGGGAAAATTTTTCAGCTGATAGATGTGGAAACTGTGATAACTGCAAAGTTTCAAAGAAGGAGCGTGACTTGTCAAGAGAGGCATTTCTTCTGATGGCTTGCATTCATTCATGCAATGGAAAATGGGGCCTCAATATGCCCATTGACATCCTGCGTGGGTCTCGAGCCAAGAAAATTCTTGATGCCCAGTTTGACAAGCTTCCGGTTCATGGACTGGGGAAAACTTATCCAGCAAATTGGTGGAAAGCTCTTGGACATCAATTGATTTCTCAAGGTTATTTGAAGGAGATTGTTAGTGAGATGTATAGAACTATAAGTGTCAATTCAAAAGGAGAGCAATTTTTGGCCTCTTCTAGACCAGATTATCAACCTCCCTTGGTTTTGTCATTGACTGCTGAAATGCTTGGAGAAGAGGAAAATAGAAGCACGCAAGAATTCAAAACTTTAGCCTCTTCAACACCAGAGGGTTTTTCAGAGGCTGAGGGACAGCTCTACCAAATGCTTTTAGAAGAAAGATTAAAGCTGGCAAGAAGTGTTGGAACAGCTCCATATGCTCTATGTGGTGATCAAACAATCAGAAAAATTGCTTTGACAAGGCCATCCACAAAAGCAAGACTCGCAAACATTGATGGTGTGAATCAGCACCTAGTAACAAAATATGGATATCATTTTCTTCAAGTTATTAAGAAACTGTCTCAAGGATTAAAGCTATCATTGGATGGGGAAGCAAGTTTGGTAACTAATGAAGTAAGGAAAGTATCTCCAGTAGCCAACAAATTGAAGTTGACATCAGCAAAGTTTGATGCATGGAAAATGTGGCAAGAAGATGGTCGTTCTATTCCAGAGATTGCTAACTATCCAGGTAGATCGGCTCCAATAAAGGAACAAACTGTTGTTGAATATCTGCTGGAAGCTGCTCAAGAAGGCTTACCTTTCAATTGGACTAGATTCTGTGAGATGATAGGACTGACCCAAGAGATCATATCAGAAATTCAGAATGCTATTTCAAAGGTTGGATCAGACAAGCTGAAGCCTATAAAAAATGAGTTGCCAGAAAATGTAAATTATCAGCATATCAAGACATTTTTGTTGATGCGAAAGTCTGGAATATCCTTAGAAGAAATTCAATCTGGAAGTCACCCGACTGGGAAAGATGAACCTGTAAATAATGCTTCAACTTTGTCACACCCTACCTTAGAAACACACTGCACAGAAAAGCAACATGAAGATGACATTTCTGCCAGAAGTTTGAGGGAAAAATGTGACTTAAAAATCAATGAGGTTCCTTCTCCATCTCTCAATGGTTGCCAGGTACAGAAGCATGCATTAGCCTCTGAGGGTGAATTCACAAGCAAACGACAAAAACTGTGTGAAACAGAGAAAATAAATCTAACTAAATTGAAAGCTACTGAGTGTTCTGTTGTAGAGTGGTTGAAGAACCTTGATGAAGGGGCTTCTTTGACTGATATTTTGGAGTACTTCAAAGGATCCAATGAAGACTCCGTGATTGAATTGTTGAATTGCCTTGAATGTGACTTTTCAATATACAAGAAAGGCAATATGTATAGGGCTATGTAA 2730 0.3971 MDTMPSLLKKYFGFSDFRPYQKEVIEKIIEKRDCLVVMATGSGKSLCYQVPPLVVNKTGIVVSPLISLMQDQVMALKQRGIKAEYLGSAQKDSTVHSKAERGQFDILFMTPEKACTIPTSFWSNLLKVGISHFSVDEAHCISEWGHDFRVEYKHLDKLREVLLDVPFVGLTATATEKVQFDIISSLKMNNPYVMVGSFDRANLFYGVKLFNRGQAFIDELVLGISKEVASGGSTIIYCTTIKDVEQIFKTLAEAGMEAGMYHGQMNAEAREESHRLFVRDELKIMVATIAFGMGIDKPNIRQVIHYGCPKSVESYYQESGRCGRDGIASVCWLYYTRSDFAKGDFYCRDLKTEKQRKAVMESLLAAERYCMLTTCRRKFLLEYFGENFSADRCGNCDNCKVSKKERDLSREAFLLMACIHSCNGKWGLNMPIDILRGSRAKKILDAQFDKLPVHGLGKTYPANWWKALGHQLISQGYLKEIVSEMYRTISVNSKGEQFLASSRPDYQPPLVLSLTAEMLGEEENRSTQEFKTLASSTPEGFSEAEGQLYQMLLEERLKLARSVGTAPYALCGDQTIRKIALTRPSTKARLANIDGVNQHLVTKYGYHFLQVIKKLSQGLKLSLDGEASLVTNEVRKVSPVANKLKLTSAKFDAWKMWQEDGRSIPEIANYPGRSAPIKEQTVVEYLLEAAQEGLPFNWTRFCEMIGLTQEIISEIQNAISKVGSDKLKPIKNELPENVNYQHIKTFLLMRKSGISLEEIQSGSHPTGKDEPVNNASTLSHPTLETHCTEKQHEDDISARSLREKCDLKINEVPSPSLNGCQVQKHALASEGEFTSKRQKLCETEKINLTKLKATECSVVEWLKNLDEGASLTDILEYFKGSNEDSVIELLNCLECDFSIYKKGNMYRAM* 910
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr10g1926 909 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 57 340 IPR027417 -
Apr10g1926 909 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 216 371 IPR001650 -
Apr10g1926 909 SUPERFAMILY "Winged helix" DNA-binding domain 398 504 IPR036390 -
Apr10g1926 909 Gene3D - 200 401 IPR027417 -
Apr10g1926 909 PANTHER DNA HELICASE RECQ FAMILY MEMBER 4 740 - -
Apr10g1926 909 Pfam DEAD/DEAH box helicase 19 178 IPR011545 GO:0003676|GO:0005524
Apr10g1926 909 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 25 192 IPR014001 -
Apr10g1926 909 Gene3D - 1 198 IPR027417 -
Apr10g1926 909 SUPERFAMILY HRDC-like 540 616 IPR010997 GO:0000166|GO:0044237
Apr10g1926 909 Pfam RecQ zinc-binding 343 400 IPR032284 -
Apr10g1926 909 SMART helicmild6 245 326 IPR001650 -
Apr10g1926 909 PANTHER WERNER SYNDROME ATP-DEPENDENT HELICASE 4 740 - -
Apr10g1926 909 SMART ultradead3 13 210 IPR014001 -
Apr10g1926 909 MobiDBLite consensus disorder prediction 759 784 - -
Apr10g1926 909 TIGRFAM recQ_fam: ATP-dependent DNA helicase, RecQ family 7 458 IPR004589 GO:0004386|GO:0006310
Apr10g1926 909 Gene3D - 402 527 IPR036388 -
Apr10g1926 909 MobiDBLite consensus disorder prediction 759 793 - -
Apr10g1926 909 Pfam RQC domain 404 501 IPR018982 GO:0006260|GO:0006281|GO:0043138
Apr10g1926 909 Pfam Helix-turn-helix domain 653 747 IPR029491 -
Apr10g1926 909 Pfam Helicase conserved C-terminal domain 221 325 IPR001650 -
Apr10g1926 909 SMART RQC_2 407 511 IPR018982 GO:0006260|GO:0006281|GO:0043138
Apr10g1926 909 Gene3D HRDC domain 541 624 IPR044876 -
Apr10g1926 909 SMART hrdc7 542 622 IPR002121 GO:0003676
Apr10g1926 909 CDD DEXHc_RecQ 6 199 - -
Apr10g1926 909 Pfam HRDC domain 547 612 IPR002121 GO:0003676
Apr10g1926 909 ProSiteProfiles HRDC domain profile. 542 622 IPR002121 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr10g1926 Apr-Chr10 32258863 32269555 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr10g1926 234 326 Eukaryotic Initiation Factors Gene Family AT5G11170 30.108 1.46e-07 52.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr10g1926 K03654 - gmx:100797777 1510.35