Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr10g1910 ATGGTCATGATGCTAAACCAGGAAAATATGAAGGCTGGCAAAGTTCACTCCAAAATTAACTGTCAATATCTCATTCCTGACAGCAAACAGCTCTCCATGAAGCTCTATTCTATTCCAATGGCTCCTTTCCTTTTTGTCATAGTTATTCTTTTTCCTCTGGCTATTGCTGACCTGAATTCAGATAAGCAAGCCCTTCTTGATTTTGCTAACGCTGTCCCCCACCGTCGGAACCTGATGTGGAATCGATCCACCTCAATCTGTACATCTTGGACAGGCATCACATGCAATGAAAATGGAACTCGTGTTGTTTATGTCCGGCTCCCTGGAGTCGGACTAGTAGGCTCCATCCCATCCAATACACTTGGCAAGCTTGATGCCGTGAAAATTATTAGCCTTCGCTCAAACCGACTCAGAGGAAATCTTCCTGCTGACATTGCTTCTCTTCCTTCTCTCCAATATCTCTACCTCCAGCATAATAACCTTTCTGGTGATATACCTGCCTCATTGTCTCCAGAACTCGTTGTACTCGATTTGTCATATAATTCCTTCACTGGTGGCATTCCAAAGACATTTCAAAATTTTTCAGAATTAACTAGTTTGAATCTCCAGAACAACTCCCTATCTGGACAGATACCTAATCTCAATGTCAGTAACCTCAGGCTTTTGAATTTAAGCTACAACCATTTGAATGGCTCTATTCCCAAAGCTCTTCAGATTTTTCCGAATTCTTCCTTTGAAGGAAACTCTCTTCTATGTGGACCACCTCTAAAGCCATGCTCTGTGGTTCCCCCTACACCTTCTCCAGCTGTGACTCCAGCTCCATCATCACCTCCTGGAAGCTCAAAAAGCAAGTTGAGTAAGGTAGCTATCATTGCAATTGCTGTTGGAGGAGCTGTGGTGCTATTCTTTTTAGCTCTTGTTATTGTTGTTTGCTGTTTAAAGAAGGAAGATGACAGTGGCTCAAATGTAGTAAAAGGGAAGGGTCCTAGTGGTGGTAGGGGTGAGAAGCCAAAAGAAGAGTTTGGGAGTGGGGTACAAGAACCTGAGAAGAACAAGTTGGTTTTCTTTGAGGGTAGTTCTTATAATTTTGATCTTGAGGATTTGTTGAGGGCTTCAGCTGAAGTTCTGGGAAAGGGTAGTTATGGTACAGCATATAAGGCTATATTGGAGGAGTCAATGACTGTTGTGGTGAAAAGATTGAAAGAAGTTGTGGTAGGCAAGAAGGACTTTGAACAGCAGATGGAGATTATAGGAAGAGTTGGACAACACCCAAATGCCGTGCCACTTCGTGCTTACTATTACTCAAAAGATGAAAAGCTTTTGGTATATGACTATGTCCAAGGTGGCAATCTATACACGCTCTTGCATGGTAGCAGGACAGGTGGAAGAACTCCATTTGATTGGGACTCTCGAATTAAAATATCCCTTGGAACTGCCAAAGGACTAGCCCACATTCATTCTGTTGGTGGTCCAAAGTTCACACATGGAAATATAAAGTCCTCAAATGTCCTCATCAACCAAGATAATGATGGCTGCATCTCTGACTTTGGCCTGACCCCTCTCATGAATGTACCAGCAACCCCTTCTAGAGCTGCAGGTTATCGTGCTCCTGAGGTCATTGAAACGCGTAAACACTCTCATAAATCCGATGTGTACAGCTTTGGTGTCCTCCTTCTTGAGATGCTCACAGGGAAGGCTCCTCTTCAATCTCCAGGACGCGATGATATGGTTGATCTCCCAAGGTGGGTTCAGTCTGTTGTTAGGGAAGAGTGGACAGCTGAAGTTTTTGATGTGGAGCTAATGAGGTACCAAAACATTGAAGAAGAAATGGTGCAAATGTTGCAAATTGCCATGGCCTGCGTGGCAAAGATGCCAGATATGAGACCTAGCATGGATGAAGTAGTGCGAATGATCGAAGAGATTCGGCAATCCGACTTGGAGAACCGACCATCTTCTGAAGAGAATAAATCTAAGGACTCAAATGTTCAGACTCCATAG 1998 0.4354 MVMMLNQENMKAGKVHSKINCQYLIPDSKQLSMKLYSIPMAPFLFVIVILFPLAIADLNSDKQALLDFANAVPHRRNLMWNRSTSICTSWTGITCNENGTRVVYVRLPGVGLVGSIPSNTLGKLDAVKIISLRSNRLRGNLPADIASLPSLQYLYLQHNNLSGDIPASLSPELVVLDLSYNSFTGGIPKTFQNFSELTSLNLQNNSLSGQIPNLNVSNLRLLNLSYNHLNGSIPKALQIFPNSSFEGNSLLCGPPLKPCSVVPPTPSPAVTPAPSSPPGSSKSKLSKVAIIAIAVGGAVVLFFLALVIVVCCLKKEDDSGSNVVKGKGPSGGRGEKPKEEFGSGVQEPEKNKLVFFEGSSYNFDLEDLLRASAEVLGKGSYGTAYKAILEESMTVVVKRLKEVVVGKKDFEQQMEIIGRVGQHPNAVPLRAYYYSKDEKLLVYDYVQGGNLYTLLHGSRTGGRTPFDWDSRIKISLGTAKGLAHIHSVGGPKFTHGNIKSSNVLINQDNDGCISDFGLTPLMNVPATPSRAAGYRAPEVIETRKHSHKSDVYSFGVLLLEMLTGKAPLQSPGRDDMVDLPRWVQSVVREEWTAEVFDVELMRYQNIEEEMVQMLQIAMACVAKMPDMRPSMDEVVRMIEEIRQSDLENRPSSEENKSKDSNVQTP* 666
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr10g1910 665 CDD STKc_IRAK 376 641 - -
Apr10g1910 665 SUPERFAMILY Protein kinase-like (PK-like) 374 647 IPR011009 -
Apr10g1910 665 MobiDBLite consensus disorder prediction 641 656 - -
Apr10g1910 665 MobiDBLite consensus disorder prediction 641 665 - -
Apr10g1910 665 ProSitePatterns Protein kinases ATP-binding region signature. 376 407 IPR017441 GO:0005524
Apr10g1910 665 Pfam Protein kinase domain 373 636 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr10g1910 665 MobiDBLite consensus disorder prediction 318 345 - -
Apr10g1910 665 ProSiteProfiles Leucine-rich repeat profile. 196 218 IPR001611 GO:0005515
Apr10g1910 665 Pfam Leucine rich repeat 115 161 IPR001611 GO:0005515
Apr10g1910 665 Pfam Leucine Rich Repeat 173 194 IPR001611 GO:0005515
Apr10g1910 665 Pfam Leucine Rich Repeat 218 238 IPR001611 GO:0005515
Apr10g1910 665 Pfam Leucine rich repeat N-terminal domain 59 96 IPR013210 -
Apr10g1910 665 Gene3D Phosphorylase Kinase; domain 1 338 445 - -
Apr10g1910 665 MobiDBLite consensus disorder prediction 331 345 - -
Apr10g1910 665 Gene3D Transferase(Phosphotransferase) domain 1 446 664 - -
Apr10g1910 665 Gene3D Ribonuclease Inhibitor 214 260 IPR032675 -
Apr10g1910 665 SUPERFAMILY L domain-like 60 259 - -
Apr10g1910 665 ProSiteProfiles Protein kinase domain profile. 370 641 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr10g1910 665 Gene3D Ribonuclease Inhibitor 58 213 IPR032675 -
Apr10g1910 665 PANTHER LRR RECEPTOR-LIKE KINASE 22 665 - -
Apr10g1910 665 PANTHER OS05G0588300 PROTEIN 22 665 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr10g1910 Apr-Chr10 32115556 32122286 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr10g1910 32 663 Receptor kinase-like Gene Family AT5G58300 67.083 0.0 861
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Apr10g1910 Pkinase 6.3e-39 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr10g1910 - - gmx:100796171 1117.06