Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr10g1908 ATGTCCGTGCAATCGACCCTGAAGCTCCAGCGCCTGAAGCAATCAACTTCAATTTCCGATTTTGAAGGTGACCCACCATGCAAAACCACCAAAAGAACCCAACCTCAGAAGAAGCTCCTCCGGATCATACTCACCGACCACGATGCCACCGACTCTGACTCTTCCGGCGACGATGAAAACCCACCCAAAAAGTTTCGAAAAGTGAAGAGGGAAATAACCCACGTCACCATCAACCTTCCCTTCTCTTATTTCCCAACCACTTCACCATCTTCCTCGTCTCCTTCCCCTGACCCGACCCGTTTCAAGCGATCCGAAAAAATACCCACCAGCCCTCGCCGCCGGAGCAAGTTCCGTGGCGTTCGCCAGCGCCCGTGGGGACGGTGGACCGCTGAGATCCGTGACCCGACCCGCAGAAAACGGGTCTGGCTCGGCACATTCGACACGGCAGAGGAAGCCGCCGCCGTTTACGACATGGCCGCCGTGAAGTACAAGGGCCGCAACGCCGTCACCAACTTCCCACTTAACGCCACCGAGAAAAAGGAGGAGGAGGAGCCGGCAGTTCTTTCGGACGATGGTTTTGCGTCGCCGACGTCTGTTTTGGCGTATTGCGACGGCGAGTCGACGCCGTTCGACGGTTTTCGTTACGGCGCGGTGGATGCGTTGGGGTTCGACGTCGATTGGCCGTTAAGTTTGACGGACGTTAACTCGGGGCTGCTGAGTCAGCGGTTTGGGAAGGAAGAGTTCAGCGAATTTGACCCGGACGAGTTCTTGACGTGGCCCAGTTGA 786 0.5687 MSVQSTLKLQRLKQSTSISDFEGDPPCKTTKRTQPQKKLLRIILTDHDATDSDSSGDDENPPKKFRKVKREITHVTINLPFSYFPTTSPSSSSPSPDPTRFKRSEKIPTSPRRRSKFRGVRQRPWGRWTAEIRDPTRRKRVWLGTFDTAEEAAAVYDMAAVKYKGRNAVTNFPLNATEKKEEEEPAVLSDDGFASPTSVLAYCDGESTPFDGFRYGAVDALGFDVDWPLSLTDVNSGLLSQRFGKEEFSEFDPDEFLTWPS* 262
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr10g1908 261 PRINTS Ethylene responsive element binding protein signature 117 128 IPR001471 GO:0003700|GO:0006355
Apr10g1908 261 PRINTS Ethylene responsive element binding protein signature 139 155 IPR001471 GO:0003700|GO:0006355
Apr10g1908 261 MobiDBLite consensus disorder prediction 41 65 - -
Apr10g1908 261 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 32 257 - -
Apr10g1908 261 PIRSF PTI6 7 261 IPR017392 GO:0003700
Apr10g1908 261 MobiDBLite consensus disorder prediction 1 33 - -
Apr10g1908 261 MobiDBLite consensus disorder prediction 1 65 - -
Apr10g1908 261 Gene3D AP2/ERF domain 115 175 IPR036955 GO:0003700|GO:0006355
Apr10g1908 261 ProSiteProfiles AP2/ERF domain profile. 116 173 IPR001471 GO:0003700|GO:0006355
Apr10g1908 261 Pfam AP2 domain 115 165 IPR001471 GO:0003700|GO:0006355
Apr10g1908 261 SUPERFAMILY DNA-binding domain 115 175 IPR016177 GO:0003677
Apr10g1908 261 CDD AP2 115 173 IPR001471 GO:0003700|GO:0006355
Apr10g1908 261 SMART rav1_2 116 179 IPR001471 GO:0003700|GO:0006355
Apr10g1908 261 MobiDBLite consensus disorder prediction 83 120 - -
Apr10g1908 261 MobiDBLite consensus disorder prediction 83 98 - -
Apr10g1908 261 PANTHER PATHOGENESIS-RELATED GENES TRANSCRIPTIONAL ACTIVATOR PTI6-LIKE 32 257 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr10g1908 Apr-Chr10 32107415 32108877 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr10g1908 38 202 AP2-EREBP Transcription Factor Family AT4G27950 43.094 1.48e-34 125
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Apr10g1908 AP2 3.1e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr10g1908 K13434 - gmx:102660028 336.265
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr10g1908 10 32107415 32108877 Apr9g1229 9 21925144 21927518 PCT