Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr10g1905 ATGTCGTATGTGCCTCCGCACCTCAGAAACGCCACTTCAACCACCGTTGCCACCGCCAGAACCTCCGCCGTAACCCTAGAAAACCACCACACCAAGCTCGCATTCCATTCCAACAACAACTCTCTCCCCTCCTTCCCCAATGCCTCTCGCCGGAGTTCCGCCGCTCCTCCGTCGCCCAGGATTCTCGCCGCCCCTGACCCAGTCTTCCCTCACTGGCAACCCTCCGAACGTGTATCTCGCATGACTCCCAACCAGATTGAAGAGGTCCGTTCCCGGCTTAATCTTGATGTTACTGTAGTGACTGACTCTCCTCCTGCACCTGCACCGATAGAATCGTTTACTGATATGTGTTTAGATCCAAGTATCATGAAGGATATTGCTTATCATGAATACACCAGGCCAACTTCAATCCAGGCACAGGCCATGCCAATTGCTCTCAGCGGAAGGGATCTGTTGGGTTGTGCCGAAACTGGTAGCGGAAAGACTGCAGCTTTCACAATACCTATGATACAGCATTGCTTGGCACAACCTCCCATTCGGCGCAATGATGGTCCCCTGGCCTTAGTTTTGGCTCCTACCAGAGAACTTGCTCAACAAATAGAAAAAGAGGTTAAAGCTTTTAGTAGATCTCTCGAGTCATTAAAAACTGCCATTGTTGTGGGCGGAACTAACATTGAAAAGCAGAGGTCTGAACTAAGAGCAGGAGTTGAAATAGCAGTTGCCACCCCCGGAAGGTTTATTGATCACCTGCAACAAGGCAACACTTCCCTCTCTAGAATTTCTTTTGTTGTTCTAGATGAGGCAGATAGAATGCTTGATATGGGTTTTGAACCACAAATAAGAGAGGTAATGAGAAATCTTCCAGAGAAGCATCAAACACTGCTGTTTAGTGCGACTATGCCTGTGGAGATTGAAGCATTAGCAAAGGAGTACTTGGCTTGCCCTGTGCAAGTGAAGGTAGGAAGAGTGAGTAGCCCAACAACTAATGTTTCACAAACTCTTGTGAAAATTTCTGAAAATGAAAAGATTGATCGGCTTCTAGACTTGCTTGTTGAGGAGGCTTCACAGGCAGAAAAATGTGGTCATCCATTTCCATTAACAATTGTGTTTGTTGAGAGAAAGGCAAGGTGTGATGAAGTTGCTGAAGCATTGGTAGCTCAAGGATTATCTGCAGTATCTCTTCATGGTGGTCGTAGTCAGAGTGAAAGAGAGGCTGCCTTGAATGATTTTCGGAGTGGCTCCACCAGCATCTTGGTTGCCACTGATGTCGCTTCTCGTGGCTTGGATGTCACCGGAGTGTCACATGTCATCAATCTAGATCTTCCAAAGACCATGGAAGATTATGTACATCGGATTGGAAGGACGGGGCGTGCTGGATCAACAGGCCTAGCTACTTCTTTTTACACAGATCGTGACATGTTTCTTGTGGCAAATATAAGGAAAGCAATAGCTGATGCTGAATCTGGGAATACACTGACATTTGCAACGGGAAAGGTTGCTAGAAGGAAAGAGAAAGAAGCGGCAGCTGCACAAAAAGAGGCAAATTTTGCTTTATCCAAACAGTTAGGATTAGGAGCTGCTTCAATTAACATTGAAGATAAGTATAAATTCATGATTACTGCCACAAACATTAGAAGAGAGGGTGCAGCAGATAGTGCCTGGGATGATTGA 1671 0.4626 MSYVPPHLRNATSTTVATARTSAVTLENHHTKLAFHSNNNSLPSFPNASRRSSAAPPSPRILAAPDPVFPHWQPSERVSRMTPNQIEEVRSRLNLDVTVVTDSPPAPAPIESFTDMCLDPSIMKDIAYHEYTRPTSIQAQAMPIALSGRDLLGCAETGSGKTAAFTIPMIQHCLAQPPIRRNDGPLALVLAPTRELAQQIEKEVKAFSRSLESLKTAIVVGGTNIEKQRSELRAGVEIAVATPGRFIDHLQQGNTSLSRISFVVLDEADRMLDMGFEPQIREVMRNLPEKHQTLLFSATMPVEIEALAKEYLACPVQVKVGRVSSPTTNVSQTLVKISENEKIDRLLDLLVEEASQAEKCGHPFPLTIVFVERKARCDEVAEALVAQGLSAVSLHGGRSQSEREAALNDFRSGSTSILVATDVASRGLDVTGVSHVINLDLPKTMEDYVHRIGRTGRAGSTGLATSFYTDRDMFLVANIRKAIADAESGNTLTFATGKVARRKEKEAAAAQKEANFALSKQLGLGAASINIEDKYKFMITATNIRREGAADSAWDD* 557
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr10g1905 556 CDD DEADc 122 319 - -
Apr10g1905 556 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 183 479 IPR027417 -
Apr10g1905 556 Coils Coil 500 520 - -
Apr10g1905 556 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 264 272 IPR000629 -
Apr10g1905 556 Pfam DEAD/DEAH box helicase 135 305 IPR011545 GO:0003676|GO:0005524
Apr10g1905 556 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 21 521 - -
Apr10g1905 556 MobiDBLite consensus disorder prediction 34 54 - -
Apr10g1905 556 MobiDBLite consensus disorder prediction 34 60 - -
Apr10g1905 556 Gene3D - 324 517 IPR027417 -
Apr10g1905 556 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 142 318 IPR014001 -
Apr10g1905 556 Pfam Helicase conserved C-terminal domain 342 459 IPR001650 -
Apr10g1905 556 Gene3D - 71 322 IPR027417 -
Apr10g1905 556 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 111 139 IPR014014 GO:0003724
Apr10g1905 556 SMART helicmild6 378 459 IPR001650 -
Apr10g1905 556 CDD SF2_C_DEAD 330 468 - -
Apr10g1905 556 Coils Coil 197 217 - -
Apr10g1905 556 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 342 500 IPR001650 -
Apr10g1905 556 SMART ultradead3 130 333 IPR014001 -
Apr10g1905 556 PANTHER ATP-DEPENDENT RNA HELICASE DBP2-LIKE 21 521 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr10g1905 Apr-Chr10 32079655 32087860 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr10g1905 111 481 Eukaryotic Initiation Factors Gene Family AT1G72730 35.733 8.69e-70 228
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr10g1905 K12823 - gmx:100818387 960.288