Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr10g1901 ATGGGTTCCGATATTTGCGTCGTCAATGGTTCGTGCACCCACGATTGGAGGAAGGGTTGGCCTCTGCGATCTGATGGATTTGCTCAACTATGCTGCAAGTGCGGATCTGCCTATGAGAATTCAGTTTTCTGTAACAAGTTCCACCGTCAACAAACTGGTTGGGGGGAGTGTTACTTTTGCAACAAGCCTATCCACTGTGGATGCATAGTATCTAGATCTTTGTTCGAGTATCTTGACTTTGGTGGTATAGGTTGTGTGAGCTGTGTAAATACTTCCCAATTGAGTATGATGAGGAATACTGAAAATCCAAATGGGTCTGTTTCATCGACCAAAAATAATGCAAGTGATCGACATTCTGCTCAGTTCGATGGCCGACTATTTATGGGCGGTGTTGATGAAGGAAAACTTATGCAATTCTGCAAAATTGTTGAAGCTAGTGAATCCAGTTGTTGGAATCAAGCTCAAAGAGATGGTTTAGTTGCACGTACTGGGCAAAGCAGCCAAGAAGCTAATAATTGTTCATTCAGGGAAAGGGATACTGGATTTTCAAATGTTATGAAATCATCTGTTCAATCATTAACATTTGCCACAGTAGAAAACAATAGATCAACATGGGAAATTAAAAACAGTCATGAATCAAATTCACAGCAATCTTTGAACATGTATTTGGGAAATCCATCAGGGAGCAACTCTGTCCCACCACCTGCTGGAGAGGCTGTAGAAGGAAGACTTGAGGGAAAAGCGTCTCATCCCTTTCATCAAGCCCAAAGATCTCGCCCTATATTTCCTAAACCATTGAAGACAGGGCTTACCATGAACATGGAAACAGATAAAGGCACAACATCTCAATCACGTATTGCTCGGCCACCTGCTGAAGGCAGGGGCAAGAATCAGTTACTTCCTCGATACTGGCCCAGGATTACTGATCAAGAGCTGGAGCGATTGGCTGGAGATTTGAAGTCCACTGTAGTGCCATTATTTGAGAAGGTGTTAAGTGCCAGTGATGCAGGTCGAATTGGTCGTCTTGTTCTCCCTAAAGCCTGTGCTGAGGCTTATTTTCCTTCTATTTCACAATCCGAAGGTGTTCCTTTGCGAGTGCAAGATGTGAAGGGAAATGAATGGACATTTCAGTTCAGATTTTGGCCTAATAACAACAGTCGGATGTATGTATTAGAGGGTGTGACGCCTTGCATACAGTCCATGCAATTACATGCGGGTGATACTGTAACATTTAGTCGCATAGATCCTGGAGGCAAACTTGTTATGGGATTCAGAAAAGCATCAAATTCTACAGATACACAGGATGCATCCACATCTGCACAATCCAATGGCATTTCAGCAAAGGGAACCACCTTTTCTGGTGGAACTGAGAATCATTCGGGTACTGGAACTGCGGGGTTGCTTAAAATTGAGAGTTATGAGATGACAAACAATAATTCACTTCAGCAACAAATTTCAGTTTTAGAGAAGAAGAGGACTCGCAATATTGGGCCTAAAAGTAAGAGGTTACTAATTGATAGTGAAGATGCAATGGAGTTGAAACTTACATGGGAAGAAGCACAGGATTTGCTTCGTCCACCACCTAGTGTCAAGCCTAGCATTGTCACAATTGAGGACCAAGTATTTGAAGAGTATGATGAACCCCCAGTTTTTGGAAAGAGAACTTTATTCAGTGCCTGTTCATCTGGGGGGAAGGAACAATGGGCTCAATGTGATGATTGCTCTAAATGGAGAAAACTGCCAGTTGATGCTCTTCTTCCTCCCAAGTGGACATGTTCTGAAAATGTTTGGGATTCAAGCAGGTCTTCATGCTCTGCACTAGAGGAGCTAAGTTCAAGGGAATTAGAAAATCTTCTGAAAACCAGCAAAGACATTAAGAAGCGGCGAATTATAGAAAGCAACAAGTCCATCCAAGAGCCCGAGCCTTCTGGCTTAGATGCTCTTGCCAGTGCAGCAGTTCTGGGAGAAAATCTCCTCGACCCAGCTGCCGAATCATCTACTGGAGCCACCACCAAACATCCTAGACACCGTCCTGGCTGCTCTTGTATCGTATGCATTCAGCCCCCAAGTGGAAAAGGTAGACACAAGCCAACATGCACATGCAACGTGTGCATGACCGTGAAGCGCCGATTCAAAACCCTCATGCTAAGGAAGAAGAAACGCCAATCAGAACGCGAAGCAGATGCCGCCCAAAAAGATCAAGTTCATCAAAAAGACGAGTCGGACGCCACCGGAGCATCAAGAGATGATACAAGCCATTTGGAGAAAGAGGGTGGACTTAAAAGAAGCCAACATGAAGTGGGTGAATCCTGTGCTGGACAAATAGACCTGAATTCTCACCCCAACCGTGAAGACATGCAAGTTGATACCACAGCACTTGGCATGCCTAGTCATCTTGAAACAACAAACCATACACCAAGGGAATATGTGAACCAAAATGGCCTAAGAAGCTTTAATAGTGAACTGCATGCTAATGACCATTCTTTGCACACTCAATCCAATGAAAGATGCTTTACTTCCATTGTGTGGAACCAAGAAAAAAGAAAAGATGATGTACACAATCATCCCAATCAAAGTCAAAACAATCTTTCTTAA 2595 0.4351 MGSDICVVNGSCTHDWRKGWPLRSDGFAQLCCKCGSAYENSVFCNKFHRQQTGWGECYFCNKPIHCGCIVSRSLFEYLDFGGIGCVSCVNTSQLSMMRNTENPNGSVSSTKNNASDRHSAQFDGRLFMGGVDEGKLMQFCKIVEASESSCWNQAQRDGLVARTGQSSQEANNCSFRERDTGFSNVMKSSVQSLTFATVENNRSTWEIKNSHESNSQQSLNMYLGNPSGSNSVPPPAGEAVEGRLEGKASHPFHQAQRSRPIFPKPLKTGLTMNMETDKGTTSQSRIARPPAEGRGKNQLLPRYWPRITDQELERLAGDLKSTVVPLFEKVLSASDAGRIGRLVLPKACAEAYFPSISQSEGVPLRVQDVKGNEWTFQFRFWPNNNSRMYVLEGVTPCIQSMQLHAGDTVTFSRIDPGGKLVMGFRKASNSTDTQDASTSAQSNGISAKGTTFSGGTENHSGTGTAGLLKIESYEMTNNNSLQQQISVLEKKRTRNIGPKSKRLLIDSEDAMELKLTWEEAQDLLRPPPSVKPSIVTIEDQVFEEYDEPPVFGKRTLFSACSSGGKEQWAQCDDCSKWRKLPVDALLPPKWTCSENVWDSSRSSCSALEELSSRELENLLKTSKDIKKRRIIESNKSIQEPEPSGLDALASAAVLGENLLDPAAESSTGATTKHPRHRPGCSCIVCIQPPSGKGRHKPTCTCNVCMTVKRRFKTLMLRKKKRQSEREADAAQKDQVHQKDESDATGASRDDTSHLEKEGGLKRSQHEVGESCAGQIDLNSHPNREDMQVDTTALGMPSHLETTNHTPREYVNQNGLRSFNSELHANDHSLHTQSNERCFTSIVWNQEKRKDDVHNHPNQSQNNLS* 865
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr10g1901 864 SUPERFAMILY DNA-binding pseudobarrel domain 325 427 IPR015300 -
Apr10g1901 864 MobiDBLite consensus disorder prediction 716 782 - -
Apr10g1901 864 SMART B3_2 327 428 IPR003340 GO:0003677
Apr10g1901 864 MobiDBLite consensus disorder prediction 224 298 - -
Apr10g1901 864 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS07G0563300 3 825 - -
Apr10g1901 864 Gene3D - 305 432 IPR015300 -
Apr10g1901 864 MobiDBLite consensus disorder prediction 719 764 - -
Apr10g1901 864 ProSiteProfiles Zinc finger CW-type profile. 562 612 IPR011124 GO:0008270
Apr10g1901 864 Pfam CW-type Zinc Finger 567 609 IPR011124 GO:0008270
Apr10g1901 864 MobiDBLite consensus disorder prediction 429 463 - -
Apr10g1901 864 ProSiteProfiles B3 DNA-binding domain profile. 327 428 IPR003340 GO:0003677
Apr10g1901 864 MobiDBLite consensus disorder prediction 273 287 - -
Apr10g1901 864 CDD B3_DNA 325 426 IPR003340 GO:0003677
Apr10g1901 864 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION REPRESSOR VAL1 3 825 - -
Apr10g1901 864 Pfam B3 DNA binding domain 327 426 IPR003340 GO:0003677
Apr10g1901 864 Gene3D - 565 620 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr10g1901 Apr-Chr10 32036405 32044010 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr10g1901 1 788 B3 DNA Binding Superfamily AT2G30470 50.435 0.0 706
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Apr10g1901 B3 1.6e-16 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr10g1901 - - gmx:100789848 1418.68
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr10g1901 10 32036405 32044010 Apr9g1225 9 21834102 21840988 PCT