Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr10g1890 ATGAAACCGGAAAAAATGGATCCAGACATTTCCCGGTGGGTCCTCGAATTCCTCCTCCGAAGTTCCGTTCCCGATTCCCTCATTCAAAAATCACTCACTGTTCTTCCTCTCTCCGCCGCCGATTCACGTCTCAAGAAAACCCTTCTTCTTCGCACTCTCCAATCCCTTCTTCTCAAAGCTTCTCTCTCCGAAACCACTCTTCAAATCTTCGAACTCCTCGAAGATCTTAACCGAAACGACTCCGTTCCCGTCACCGATTCCATGCGTCGCGCTTATTGCGCCGTTGCTGTTGAGTGCACCGTTAAGTACCTTGCTGCCTCTTCCGACGACCCCGCCGGCGAGTATTTTGATGCCGTTCGGAGGATCTGGCGCGGGCGTGTTGCTGGAATGGGGGTTGAGGGTCGACGGAGCGAGTTGGTCTCCGGCGAGCTGAGTCAGTGGGGGGAGGACATTGAGGCGGCGCTTTGGGATCCTAGGGTTTGTGAGAGGTTGGCGAGTTTGAACAGTAGAAGGGAAGCGTTGAAGGAAGTGAGGGGGTTTTTGGAGGAAGCGTGGGAAATGATGGGTCCTTCGTTTCTTGATTCGGTGGGAGCGTTGTCGAAGGGGAAGGGTTTGTGCCCTGAAGGTGTTTGTGAAATTGCTTTGAGTGTTGAAGCGCTCAGGAAGCGTGAGGGAGAGTTGGAGGGTTCAAGGAAGGAGAAAAAGGAATCTTTTGGTGGTGGTGGTGGTGATAGGAGTGATGATAGTGATGATGATGATGATGATGATAATAATGATAATGATGATCATGATCGTGATGGTGGTGGTGGTGGTGCTAGTGATGATGGTGCATGCATGGAGGGTGTGGCAGTGCAGGATGAAAATCAAGGCAAGGAACCATTGGAAGAGAGAGTGGTGTTGCCTGCACAGAGATATAAAGCAGTTCAGAAAGGGAATCCTCAGCTTAAACGAAAGCATTCTGCACTTCGTACATGTAATAGGGGAGTTAAAATATCTGATCCAGAGGAAGTGGAGCCAGCAAACATGTGGAGCCACTACAAATATGATCCAGTGTCTACTGCTGAAGTTAGAAGAGTTCGGGAATCCCTTAAATCAAGTTCTTTTGAGTTACGATCGTTGGTGAAGGATCCTCTCCCTGATGCATTGCATATGTCTGAAGTTGTAAGATCCAAATTGGCAACTGAAGATACAAATTTTGAGCCACTTGTTGAAAATCAGAGTGAAGATGTATATGTACCAAACCCTGATGTTTGCAAGAGTATTGTACCATTTCAGCCTAAAAATGATACCAATCTTGGGAAGAAATCTTCTGTTCGCTCTAGTAATGCTTGTCACCCCAACTTAATGGAACGGAGAAGTAATGCTCGTACTTTTGAGTGGGATGATTCAATGGACAACTTGCCTCAAGGAAAACAGCCAAGGAGGAGGAAAAGGAAATGGACTTCATTGGAAGAGGAGACACTAAGGGCCGGTGTAAAAATGTTTGGAGAAGGAAACTGGGCATCAATCCGAAATTTTTACAGTAACATATTTGAAAATAGAAGTGGAGTTGATCTGAAGGACAAGTGGAGAAACATGATACGGTGA 1587 0.4694 MKPEKMDPDISRWVLEFLLRSSVPDSLIQKSLTVLPLSAADSRLKKTLLLRTLQSLLLKASLSETTLQIFELLEDLNRNDSVPVTDSMRRAYCAVAVECTVKYLAASSDDPAGEYFDAVRRIWRGRVAGMGVEGRRSELVSGELSQWGEDIEAALWDPRVCERLASLNSRREALKEVRGFLEEAWEMMGPSFLDSVGALSKGKGLCPEGVCEIALSVEALRKREGELEGSRKEKKESFGGGGGDRSDDSDDDDDDDNNDNDDHDRDGGGGGASDDGACMEGVAVQDENQGKEPLEERVVLPAQRYKAVQKGNPQLKRKHSALRTCNRGVKISDPEEVEPANMWSHYKYDPVSTAEVRRVRESLKSSSFELRSLVKDPLPDALHMSEVVRSKLATEDTNFEPLVENQSEDVYVPNPDVCKSIVPFQPKNDTNLGKKSSVRSSNACHPNLMERRSNARTFEWDDSMDNLPQGKQPRRRKRKWTSLEEETLRAGVKMFGEGNWASIRNFYSNIFENRSGVDLKDKWRNMIR* 529
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr10g1890 528 PANTHER MYB TRANSCRIPTION FACTOR 6 528 - -
Apr10g1890 528 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 472 528 IPR017930 -
Apr10g1890 528 Gene3D - 469 528 - -
Apr10g1890 528 MobiDBLite consensus disorder prediction 224 278 - -
Apr10g1890 528 MobiDBLite consensus disorder prediction 456 479 - -
Apr10g1890 528 CDD SANT_TRF 478 528 - -
Apr10g1890 528 Pfam Myb-like DNA-binding domain 477 526 IPR001005 -
Apr10g1890 528 Coils Coil 164 184 - -
Apr10g1890 528 PANTHER MYB TRANSCRIPTION FACTOR 6 528 - -
Apr10g1890 528 SUPERFAMILY Homeodomain-like 473 527 IPR009057 -
Apr10g1890 528 SMART sant 476 528 IPR001005 -
Apr10g1890 528 MobiDBLite consensus disorder prediction 246 261 - -
Apr10g1890 528 MobiDBLite consensus disorder prediction 224 245 - -
Apr10g1890 528 ProSiteProfiles Myb-like domain profile. 472 527 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr10g1890 Apr-Chr10 31940537 31944237 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr10g1890 480 527 Single Myb Histone (SMH) Gene Family AT1G15720 54.167 1.87e-08 54.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Apr10g1890 Myb_DNA-binding 2.9e-08 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr10g1890 - K11111 aprc:113849788 931.013