Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr10g1889 ATGACCAGAAAAAAGGTGAAATTGGCATTCATAGCCAATGAGTCAGCAAGGAAGGCAACATACAAGAAACGGAAGAAGGGTTTGGTGAAAAAGATTGATGAACTAAGCACTCTTTGTGGCATTGAAGCATGTGCTGTGATTTATGGGCCCTATGATCCTGAACCTGAGGTTTGGCCATCCTCTTGGGGGGTCCAAAGGGTGTTGGCAAAGTTCAGGACCATGCCTGAATTGGAGCAAAGCAAGAAGATGGTGAACCAAGAGAGTTTCTTGAACCAAAGGATCATGAAGGGTAAGGAACAAATGAAGAAACAAGTGAAAGATAATAGGGAGAAGGAGATGGCCATGCTCATGTTTCAATGCCTTAGTGCAGGGATGGTGATGCTTAATAACATGACCATGATTGATTTGAATGATCTTACATGGTTGATTGATAAGAACTTGAGGGACATTGGTAGAAGGTTGGAAACAACTATGAATGTTCAAGAAATGACACCATACCAACCTCAAATGGCAACACCAACATTGGAAGTGGCTAAGAATGAAGAAATGGCATTGATGGATCATGGTCATGGGAATGCTTATCCTATTCATATGCAAAGGAATTGGTTTATGAATTTGCTCAATGGTAACAATGGGAATGAGACAACAATGCCTCAATTTGGAGATGCTAATATCCAAAGTGGCTTTTGGCCTAACCTTTTACCTTGA 708 0.411 MTRKKVKLAFIANESARKATYKKRKKGLVKKIDELSTLCGIEACAVIYGPYDPEPEVWPSSWGVQRVLAKFRTMPELEQSKKMVNQESFLNQRIMKGKEQMKKQVKDNREKEMAMLMFQCLSAGMVMLNNMTMIDLNDLTWLIDKNLRDIGRRLETTMNVQEMTPYQPQMATPTLEVAKNEEMALMDHGHGNAYPIHMQRNWFMNLLNGNNGNETTMPQFGDANIQSGFWPNLLP* 236
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr10g1889 235 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 210 - -
Apr10g1889 235 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL80 1 210 - -
Apr10g1889 235 CDD MADS_SRF_like 2 85 IPR033897 GO:0000981|GO:0000987|GO:0045944
Apr10g1889 235 ProSiteProfiles MADS-box domain profile. 1 49 IPR002100 GO:0003677|GO:0046983
Apr10g1889 235 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 50 IPR002100 GO:0003677|GO:0046983
Apr10g1889 235 SUPERFAMILY SRF-like 2 95 IPR036879 GO:0003677|GO:0046983
Apr10g1889 235 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Apr10g1889 235 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Apr10g1889 235 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Apr10g1889 235 Gene3D - 13 97 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr10g1889 Apr-Chr10 31937706 31938413 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr10g1889 1 159 Type I MADS-box Gene Family AT5G48670 61.006 1.65e-61 194
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Apr10g1889 SRF-TF 1.3e-16 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr10g1889 - - gmx:106797065 290.426